Browse Element(s) Details


OsAffx.28370.1.S1_at

Description tigr:9637.m02958
TID=OsAffx.28370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g342709/11hypothetical protein
LOC_Os04g590305/11hypothetical protein
LOC_Os09g315102/11NAD dependent epimerase/dehydratase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230Os.10546.1.S1_s_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230OsAffx.30138.1.S1_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34240OsAffx.17993.1.S1_at10/119+20218376..20219892hypothetical protein
LOC_Os09g34250Os.48216.1.S1_at11/119+20221695..20223511UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34260OsAffx.10665.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55138.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260OsAffx.20707.2.S1_x_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55476.1.S1_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed
LOC_Os09g34290OsAffx.30140.1.S1_at11/119+20241008..20242592hypothetical protein
LOC_Os09g34300Os.10518.1.S1_at11/119+20243173..20248047Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os09g34310NANA9+20251801..20254012expressed protein
LOC_Os09g34320Os.5209.2.S1_at10/119+20257935..20259483expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28370.1.S1_at--275--1111NONE
AGTGTGAGGAAAATACGTTGTTACG
NONE
OsAffx.28370.1.S1_at--368--11NONE
TGTGAGGAAAATACGTTGTTACGGT
NONE
OsAffx.28370.1.S1_at--876--3953Chr09:20232997..20233021 (25 bp)
CGGGCGGTACCAATTCTGTCCCTGT
LOC_Os09g34270
OsAffx.28370.1.S1_at--133--6976Chr09:20233003..20233027 (25 bp)
GTACCAATTCTGTCCCTGTGCAGTA
LOC_Os09g34270
OsAffx.28370.1.S1_at--377--9996Chr09:20233004..20233028 (25 bp)
TACCAATTCTGTCCCTGTGCAGTAC
LOC_Os09g34270
OsAffx.28370.1.S1_at--138--4395Chr09:20233006..20233030 (25 bp)
CCAATTCTGTCCCTGTGCAGTACCA
LOC_Os09g34270
OsAffx.28370.1.S1_at--1115--3134Chr09:20233008..20233032 (25 bp)
AATTCTGTCCCTGTGCAGTACCACG
LOC_Os09g34270
OsAffx.28370.1.S1_at--389--114Chr09:20233009..20233033 (25 bp)
ATTCTGTCCCTGTGCAGTACCACGC
LOC_Os09g34270
OsAffx.28370.1.S1_at--403--8712Chr09:20233013..20233037 (25 bp)
TGTCCCTGTGCAGTACCACGCGGAG
LOC_Os09g34270
OsAffx.28370.1.S1_at--369--7252Chr09:20233014..20233038 (25 bp)
GTCCCTGTGCAGTACCACGCGGAGA
LOC_Os09g34270
OsAffx.28370.1.S1_at--434--4511Chr09:20233369..20233393 (25 bp)
GCCGCTTACTTCAACACCGCTGCCG
LOC_Os09g34270
Target Sequence 
AGTGTGAGGAAAATACGTTGTTACGGTACAGCGGTCGGTACCGGTACCGCCCGGTACCAAAATCCTGGCCGTTGGATCTG
GCCCGATCTAACGGCTGGTAGAGTTTGGTACCGGGCGGTACCAATTCTGTCCCTGTGCAGTACCACGCGGAGAACTGAGG
TGGAAGGGCAAAAACGTAATTTCGCGTGCAATAACCGGATCGGGAGGGATGGACGGGCAGCTCGAACCCTAGAAGCGCTG
GGATTCTTGATCGATCGACGCCGCCGACTCTTGGAGGTGAACTCAGCCGTCGCCGCCGCCGCCTCCGGGAAGGACGACAT
CGACGCCGCCACCGTCGCCGGGAACGACAAGTTCGCTGCTGCCGTTGCCTGCTTCAACGTTGCCGCCGCTACCGTCGCGG
GGAAGGACGACATCGACGCCGCTGCCGCCGGGAAGGAAGACATCGACGCCGCCGCCACCGGGAACGACGAGTTCGCTACC
GCCGCCGCTTACTTCAACACCGCTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis