Browse Element(s) Details


OsAffx.28441.1.S1_at

Description tigr:9635.m01433
TID=OsAffx.28441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1445011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14400NANA7+8216294..8218998hypothetical protein
LOC_Os07g14410OsAffx.442.1.S1_x_at9/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.2.S1_s_at6/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.4.S1_x_at5/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.442.1.S1_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.4.S1_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.2.S1_x_at4/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.1.S1_x_at3/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.30226.1.S1_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.24587.1.S1_x_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14410OsAffx.19052.1.S1_at1/117+8223646..8228544retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14420OsAffx.28440.1.S1_at11/117+8228926..8229653hypothetical protein
LOC_Os07g14430NANA7+8234912..8237094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g14440OsAffx.16261.1.S1_at10/117+8237465..8238290hypothetical protein
LOC_Os07g14450OsAffx.28441.1.S1_at11/117+8239687..8240493hypothetical protein
LOC_Os07g14460OsAffx.28442.1.S1_at11/117+8245083..8245349hypothetical protein
LOC_Os07g14470OsAffx.20818.1.S1_at11/117+8246699..8248756hypothetical protein
LOC_Os07g14480NANA7+8249928..8250332hypothetical protein
LOC_Os07g14490OsAffx.30223.2.S1_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14490OsAffx.30223.1.S1_s_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14500OsAffx.30223.1.S1_at11/117+8257378..8258557hypothetical protein
LOC_Os07g14514Os.38884.2.S1_x_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.27723.1.S1_a_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38884.1.S1_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38157.1.S1_s_at1/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28441.1.S1_at--720--4292Chr10:241774..241798 (25 bp)
CCTTCTCGGCGAGCAAGGAAACGCG
NONE
OsAffx.28441.1.S1_at--169--10592Chr10:241776..241800 (25 bp)
TTCTCGGCGAGCAAGGAAACGCGCA
NONE
OsAffx.28441.1.S1_at--739--9512Chr10:241777..241801 (25 bp)
TCTCGGCGAGCAAGGAAACGCGCAG
NONE
OsAffx.28441.1.S1_at--932--4072Chr10:241783..241807 (25 bp)
CGAGCAAGGAAACGCGCAGCGGGTC
NONE
OsAffx.28441.1.S1_at--493--3931Chr07:8239769..8239793 (25 bp)
CGGCGGCTAAGAGCGCAGCTTGGCA
LOC_Os07g14450
OsAffx.28441.1.S1_at--898--3731Chr07:8239763..8239787 (25 bp)
CTAAGAGCGCAGCTTGGCAAGCGGA
LOC_Os07g14450
OsAffx.28441.1.S1_at--201--5072Chr10:241830..241852 (23 bp)
GCAGCTTGGCAAGCGGAGGCAGCTA
NONE
OsAffx.28441.1.S1_at--42--932Chr10:241844..241868 (25 bp)
AGGCAGCTACGGTGACAACGGGCCA
NONE
OsAffx.28441.1.S1_at--146--5072Chr10:241846..241870 (25 bp)
GCAGCTACGGTGACAACGGGCCAAG
NONE
OsAffx.28441.1.S1_at--817--3372Chr10:241847..241871 (25 bp)
CAGCTACGGTGACAACGGGCCAAGC
NONE
OsAffx.28441.1.S1_at--107--1572Chr10:241848..241872 (25 bp)
AGCTACGGTGACAACGGGCCAAGCG
NONE
Target Sequence 
CCTTCTCGGCGAGCAAGGAAACGCGCAGCGGGTCGAGCGGCGGCGGCTAAGAGCGCAGCTTGGCAAGCGGAGGCAGCTAC
GGTGACAACGGGCCAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis