Browse Element(s) Details


OsAffx.28446.1.S1_at

Description gb:NM_186853.1
DB_XREF= gi:34900791
GEN=P0021G06.20
TID=OsAffx.28446.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) glucosyltransferase-2-like protein (P0021G06.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1463011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14590Os.11951.1.S1_at11/117+8319955..8323354IAA-amino acid hydrolase 1, putative, expressed
LOC_Os07g14600Os.29093.1.S1_at10/117+8324948..8326748Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g14640OsAffx.16264.1.S1_at8/117+8348554..8349231hypothetical protein
LOC_Os07g14650Os.25866.1.S1_x_at11/117+8350388..8353151expressed protein
LOC_Os07g14650Os.25866.2.S1_at11/117+8350388..8353151expressed protein
LOC_Os07g14660OsAffx.22756.1.S1_s_at11/117+8356892..8357509Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14670OsAffx.25729.2.S1_x_at2/117+8359369..8359740transposon protein, putative, unclassified
LOC_Os07g14680OsAffx.10172.1.S1_at10/117+8361096..8364868hypothetical protein
LOC_Os07g14690OsAffx.22403.1.S1_at10/117+8366168..8367375hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28446.1.S1_at--138--9111Chr07:8346769..8346789 (21 bp)
TGCTCCGCCCTGACTGTGAAGATGA
LOC_Os07g14630
OsAffx.28446.1.S1_at--906--4151Chr07:8346545..8346784 (25 bp)
CGCCCTGACTGTGAAGATGATCCTT
LOC_Os07g14630
OsAffx.28446.1.S1_at--444--5731Chr07:8346539..8346778 (25 bp)
GACTGTGAAGATGATCCTTTGGATC
LOC_Os07g14630
OsAffx.28446.1.S1_at--573--6371Chr07:8346527..8346551 (25 bp)
GATCCTTTGGATCAGCTCAACAAAC
LOC_Os07g14630
OsAffx.28446.1.S1_at--750--10851Chr07:8346521..8346545 (25 bp)
TTGGATCAGCTCAACAAACCGCTTA
LOC_Os07g14630
OsAffx.28446.1.S1_at--772--2351Chr07:8346506..8346530 (25 bp)
AAACCGCTTAACACTGACATGGCCG
LOC_Os07g14630
OsAffx.28446.1.S1_at--1152--9811Chr07:8346498..8346522 (25 bp)
TAACACTGACATGGCCGGGAACAAC
LOC_Os07g14630
OsAffx.28446.1.S1_at--933--2091Chr07:8346490..8346514 (25 bp)
ACATGGCCGGGAACAACCACGACGA
LOC_Os07g14630
OsAffx.28446.1.S1_at--242--6051Chr07:8346164..8346188 (25 bp)
GAGATCAGGAGGTCTGCTCGTCGCC
LOC_Os07g14630
OsAffx.28446.1.S1_at--162--7191Chr07:8346099..8346123 (25 bp)
GTCGGCGTTGGAGTTTGAGCGGCTC
LOC_Os07g14630
OsAffx.28446.1.S1_at--1057--9651Chr07:8346055..8346079 (25 bp)
TCAGCAAGGTAGACGATGAGCCACT
LOC_Os07g14630
Target Sequence 
TGCTCCGCCCTGACTGTGAAGATGATCCTTTGGATCAGCTCAACAAACCGCTTAACACTGACATGGCCGGGAACAACCAC
GACGACGCGTTGCTCCGACAAGCCCTCCTCGACGTGGCCGGAGCCGGAGCGTGCGTGGTGCCATGGGCGCCGCAGCGCGA
CGTGCTGCGGCACAGGGCGGTGGGGTGCTTCCTGACGCACAGCGGGTGGAACTCGACGGCGGAGGGCGTCGCGGAGGGCG
TGCCGATGGTGTGCTGGCCCTTCTTCGCGGACCAGCAGATCAACAGCCGCCTCGTCGGGGCCGTGTGGGGGAACAGGGTG
GACATGAAGGACGCGTGCGAGAGGGGCGTGGTGGAGAGGTCGGTCAAGGAGGCGATGGAGTCCGGCGAGATCAGGAGGTC
TGCTCGTCGCCTGGCGGAGCAGGTGAAGCGGGACACCGGTGACGGCGGTTCGTCGGCGTTGGAGTTTGAGCGGCTCGTCG
GCTTCATCAGGGAGCTCAGCAAGGTAGACGATGAGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis