Browse Element(s) Details


OsAffx.28653.1.S1_x_at

Description tigr:9635.m02814
TID=OsAffx.28653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g289309/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28900OsAffx.16463.1.S1_at11/117+16940491..16945138pentatricopeptide, putative, expressed
LOC_Os07g28910Os.51194.1.A1_x_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910Os.18659.1.S1_s_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.12663.1.S1_at7/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.11133.1.S1_at1/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28920Os.53096.1.S1_at11/117+16953997..16958742expressed protein
LOC_Os07g28930Os.8135.1.S1_at11/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28930OsAffx.28653.1.S1_x_at9/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28940Os.38150.1.A1_s_at9/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28940Os.11809.1.S1_at6/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28960OsAffx.16464.1.S1_at11/117+16987773..16988418hypothetical protein
LOC_Os07g28970Os.24942.4.A1_x_at6/117+16993244..16993959hypothetical protein
LOC_Os07g28970Os.24942.4.A1_at4/117+16993244..16993959hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28653.1.S1_x_at--503--4391Chr07:16967463..16967487 (25 bp)
GCCAAGACCGCTGATGTGAAGCATA
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--867--7731Chr07:16967559..16967583 (25 bp)
GGTGGTGTCAAGCACTCAGATTTGA
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--32--2651Chr07:16967584..16967608 (25 bp)
AACCAGGCACTGTAAGTGCTGCCAA
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--191--7311Chr07:16967599..16967623 (25 bp)
GTGCTGCCAATGTCGATTCCAAGAG
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--298--3291Chr07:16967632..16967656 (25 bp)
CAAAGCCCAGCACTGGAAGTTTTGA
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--1036--1371Chr07:16967686..16967710 (25 bp)
AGACCAGCACTGGAAGTTTTGACAA
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--603--5551Chr07:16967796..16967820 (25 bp)
GAAAGTGTTACCAGCGGCGACGACC
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--225--8391Chr07:16967811..16967835 (25 bp)
GGCGACGACCTAAACGACATTGATA
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--442--2071Chr07:16967845..16967869 (25 bp)
ACATTGGACGTGTTGCTGCAAGTAT
LOC_Os07g28930
OsAffx.28653.1.S1_x_at--729--7971Chr07:16968730..16969216 (25 bp)
GGATCCGCCCCTGATGGCTTTTATC
NONE
OsAffx.28653.1.S1_x_at--363--8871Chr07:16969207..16969227 (21 bp)
TGATGGCTTTTATCCCTGTTCTCCG
NONE
Target Sequence 
GCCAAGACCGCTGATGTGAAGCATAACATTCGAAGCGTTGTTAACACTTATTTGAGGAATTTTGATGTGAAGCACAACAC
TGGAAACATTGTTGATGGTGGTGTCAAGCACTCAGATTTGAAACCAGGCACTGTAAGTGCTGCCAATGTCGATTCCAAGA
GTATAAGTGCAAAGCCCAGCACTGGAAGTTTTGAGAACAGTGATGCCAAGAGTATTAGTGCAAAGACCAGCACTGGAAGT
TTTGACAACAGTGATGCCAGAAATATTATGAAGGCAAACACTGGAATTGTTGCTAACAATGATATCAAGGATACTGATGT
ACAGACTAATACCGAAAGTGTTACCAGCGGCGACGACCTAAACGACATTGATAGAAAGCCAAACATTGGACGTGTTGCTG
CAAGTATACAGAGGCTGGAGAGCAGCATAGGCAAAGTGCAAAGTGGAAAATATCGGGGGTGCTCCGGGGTATCCATGGGT
CTTGTGGGTGTAGGGAGGACTCAAGTGCCCCCTGCACCCACGTTGGATCCGCCCCTGATGGCTTTTATCCCTGTTCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28653.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis