Browse Element(s) Details


OsAffx.28655.1.S1_at

Description tigr:9635.m02832
TID=OsAffx.28655.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2911011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29040OsAffx.28654.1.S1_at8/117+17027048..17027537hypothetical protein
LOC_Os07g29050OsAffx.5478.1.S1_at10/117+17028739..17030885hypothetical protein
LOC_Os07g29060OsAffx.5479.1.S1_at11/117+17035157..17037393hypothetical protein
LOC_Os07g29060Os.23212.1.S1_at2/117+17035157..17037393hypothetical protein
LOC_Os07g29060Os.18229.3.S1_x_at1/117+17035157..17037393hypothetical protein
LOC_Os07g29070OsAffx.16468.1.S1_at11/117+17037743..17039222calcineurin-like phosphoesterase family protein, putative
LOC_Os07g29080OsAffx.18924.2.S1_x_at7/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.19842.1.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.19421.1.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.18924.3.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29090OsAffx.19421.2.S1_at2/117+17042624..17043496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29090OsAffx.31898.1.S1_at1/117+17042624..17043496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.20497.1.S1_at3/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.3348.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.31287.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.22387.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29110OsAffx.28655.1.S1_at11/117+17051518..17052001hypothetical protein
LOC_Os07g29120OsAffx.19542.3.S1_x_at2/117+17052207..17057495retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29130NANA7+17059536..17061131retrotransposon protein, putative, LINE subclass
LOC_Os07g29140NANA7+17062765..17064469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29150NANA7+17065395..17066351hypothetical protein
LOC_Os07g29160NANA7+17068585..17069909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29170Os.46610.1.A1_x_at4/117+17073145..17079173transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g29170OsAffx.3347.1.S1_at1/117+17073145..17079173transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28655.1.S1_at--961--9351Chr07:17051597..17051621 (25 bp)
TCGACCCCGCGCTGAAGACTGTTTG
LOC_Os07g29110
OsAffx.28655.1.S1_at--600--4191Chr07:17051601..17051625 (25 bp)
CCCCGCGCTGAAGACTGTTTGCAAG
LOC_Os07g29110
OsAffx.28655.1.S1_at--781--8991Chr07:17051609..17051633 (25 bp)
TGAAGACTGTTTGCAAGCTGGCGTT
LOC_Os07g29110
OsAffx.28655.1.S1_at--921--1391Chr07:17051612..17051636 (25 bp)
AGACTGTTTGCAAGCTGGCGTTGGA
LOC_Os07g29110
OsAffx.28655.1.S1_at--171--1051Chr07:17051636..17051660 (25 bp)
AGGTGATGGCCGGTGTCGAGCCCGT
LOC_Os07g29110
OsAffx.28655.1.S1_at--75--8491Chr07:17051660..17051684 (25 bp)
TGGCGGAGACTCTCCGCAAGGCAGA
LOC_Os07g29110
OsAffx.28655.1.S1_at--653--2931Chr07:17051677..17051701 (25 bp)
AAGGCAGAGGCGATCCTTCGCATGA
LOC_Os07g29110
OsAffx.28655.1.S1_at--839--5031Chr07:17051680..17051704 (25 bp)
GCAGAGGCGATCCTTCGCATGAAGA
LOC_Os07g29110
OsAffx.28655.1.S1_at--664--8371Chr07:17051685..17051709 (25 bp)
GGCGATCCTTCGCATGAAGAAGATG
LOC_Os07g29110
OsAffx.28655.1.S1_at--716--8991Chr07:17051699..17051723 (25 bp)
TGAAGAAGATGAAGCCTCCTCCGGC
LOC_Os07g29110
OsAffx.28655.1.S1_at--23--5351Chr07:17051703..17051727 (25 bp)
GAAGATGAAGCCTCCTCCGGCGAAG
LOC_Os07g29110
Target Sequence 
TCGACCCCGCGCTGAAGACTGTTTGCAAGCTGGCGTTGGAGGTGATGGCCGGTGTCGAGCCCGTGGCGGAGACTCTCCGC
AAGGCAGAGGCGATCCTTCGCATGAAGAAGATGAAGCCTCCTCCGGCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis