Browse Element(s) Details


OsAffx.28781.1.S1_at

Description tigr:9635.m03612
TID=OsAffx.28781.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3653011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed
LOC_Os07g36500NANA7+21825524..21826070Histone H4, putative, expressed
LOC_Os07g36510OsAffx.8277.2.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36510OsAffx.21885.1.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36520OsAffx.22562.1.S1_at11/117+21835300..21838224F-box domain containing protein
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36560Os.30000.1.S1_at10/117+21853033..21855198Transferase family protein, expressed
LOC_Os07g36570Os.33145.1.S1_at11/117+21861415..21866821D-mannose binding lectin family protein, expressed
LOC_Os07g36580OsAffx.16585.1.S1_s_at11/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.16585.1.S1_at9/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.10158.1.S1_x_at1/117+21868352..21870747hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28781.1.S1_at--1104--10151Chr07:21842777..21842801 (25 bp)
TATCTGCTGCAGAGATTCGACGCCG
LOC_Os07g36530
OsAffx.28781.1.S1_at--666--1951Chr07:21842805..21842829 (25 bp)
ACTGGCTGGATCTGACACTCGCGGT
LOC_Os07g36530
OsAffx.28781.1.S1_at--432--10111Chr07:21843552..21843576 (25 bp)
TATGGACAACCTTCCCAAGTGTGAG
LOC_Os07g36530
OsAffx.28781.1.S1_at--181--311Chr07:21843595..21843619 (25 bp)
ATAGCGCAGTTCCATGGCTTTGTGC
LOC_Os07g36530
OsAffx.28781.1.S1_at--616--2711Chr07:21843621..21843645 (25 bp)
AAGCATGCTACATCTCCTGAGAAGA
LOC_Os07g36530
OsAffx.28781.1.S1_at--782--8711Chr07:21843739..21843763 (25 bp)
TGTCGCTCGCCAGATATCTACAAGA
LOC_Os07g36530
OsAffx.28781.1.S1_at--569--71Chr07:21843772..21843796 (25 bp)
ATTGCTCTCGACTGCCTTGAAGAAG
LOC_Os07g36530
OsAffx.28781.1.S1_at--867--5351Chr07:21843790..21843814 (25 bp)
GAAGAAGTAGAGATCCGTCCCATAG
LOC_Os07g36530
OsAffx.28781.1.S1_at--296--1031Chr07:21843887..21843911 (25 bp)
AGGTGGTCTATCAGCAGTCACCATT
LOC_Os07g36530
OsAffx.28781.1.S1_at--857--1031Chr07:21843938..21843962 (25 bp)
AGGTCCGCAGCATGTATCTTTCAAA
LOC_Os07g36530
OsAffx.28781.1.S1_at--698--931Chr07:21843979..21844003 (25 bp)
AGGCAATTGGCCTCTACTACACAAA
LOC_Os07g36530
Target Sequence 
TATCTGCTGCAGAGATTCGACGCCGTCGACTGGCTGGATCTGACACTCGCGGTTCCTCAGGGAGTGGAGGCATACAGGAC
ATTCATGGATGATATGGACAACCTTCCCAAGTGTGAGACATTGGTGGTAGCTCTAATAGCGCAGTTCCATGGCTTTGTGC
CAAGCATGCTACATCTCCTGAGAAGATGCAGCCATGTAAAGAAACTTGTGGTAATGATTATTGAACACAGAGACCCACCT
CCATTATCACCATCCAGTTTCTGCTCGACAGCATGCCCCTGTCGCTCGCCAGATATCTACAAGACCGACGGCATTGCTCT
CGACTGCCTTGAAGAAGTAGAGATCCGTCCCATAGGATCAGCTCCTGTGGGAGTAGTTGCAGAATTTGTGGATCAGATAT
TCAGACTGGATGCAGCCATGCTCAAGAAGGTGGTCTATCAGCAGTCACCATTTAGACCAGACCAGGAGGGCTACGAGAAG
GTCCGCAGCATGTATCTTTCAAATCCCAGAATCGAGTTCAGGCAATTGGCCTCTACTACACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis