Browse Element(s) Details


OsAffx.28849.1.S1_at

Description tigr:9635.m04090
TID=OsAffx.28849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4092011/11APO protein 3, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40974Os.12089.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974OsAffx.16668.2.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.20078.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.52782.1.S1_at1/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28849.1.S1_at--818--1811Chr07:24489967..24489991 (25 bp)
ACGCCCGGTATACTCCATCGAAGGG
LOC_Os07g40920
OsAffx.28849.1.S1_at--899--3531Chr07:24489982..24490006 (25 bp)
CATCGAAGGGAGAATCGTGGACTTT
LOC_Os07g40920
OsAffx.28849.1.S1_at--386--3991Chr07:24489997..24490021 (25 bp)
CGTGGACTTTGAGCCAGACGACGAC
LOC_Os07g40920
OsAffx.28849.1.S1_at--506--1851Chr07:24490020..24490044 (25 bp)
ACGAAGATGACAGCGCCGACGACAC
LOC_Os07g40920
OsAffx.28849.1.S1_at--291--5891Chr07:24490112..24490136 (25 bp)
GAGCTGGGTGCACGGACGCTGCAGT
LOC_Os07g40920
OsAffx.28849.1.S1_at--1028--1831Chr07:24490127..24490151 (25 bp)
ACGCTGCAGTCGTGGCTGGACATGC
LOC_Os07g40920
OsAffx.28849.1.S1_at--946--9131Chr07:24490242..24490266 (25 bp)
TGCGGATGTGCAAGGCCAGCAAGCA
LOC_Os07g40920
OsAffx.28849.1.S1_at--650--8591Chr07:24490317..24490341 (25 bp)
TGGTCCGGCCCAACTACGTCTGGCA
LOC_Os07g40920
OsAffx.28849.1.S1_at--1046--9311Chr07:24490386..24490410 (25 bp)
TCGCCAACGAGCTGAAGAGATACTA
LOC_Os07g40920
OsAffx.28849.1.S1_at--388--8991Chr07:24490398..24490422 (25 bp)
TGAAGAGATACTACGGCAAGGCCCC
LOC_Os07g40920
OsAffx.28849.1.S1_at--820--1531Chr07:24490478..24490502 (25 bp)
AGCATGATGCGGCTCGACGTCGTGC
LOC_Os07g40920
Target Sequence 
ACGCCCGGTATACTCCATCGAAGGGAGAATCGTGGACTTTGAGCCAGACGACGACGAAGATGACAGCGCCGACGACACAG
GCCCATCGCTGCCTTCTCTTGCCGCCGATGAAGCCGGCAAGATGGAGGAGGAGATGACGGTGTGCGAGCTGGGTGCACGG
ACGCTGCAGTCGTGGCTGGACATGCGCGCCGGCGCGGCGAGGCTGATGGGCAAGTACGGCGTGGTGACGTGCGGCTACTG
CCCGGAGGTGCAGGTCGGGCCGAAGGGGCACAAGGTGCGGATGTGCAAGGCCAGCAAGCACCAGCAGCGGGACGGGCAGC
ACGCGTGGCAGGAGGCCACCGTCGACGACCTGGTCCGGCCCAACTACGTCTGGCACGTCCCCGCCACCGGCCATGGTGGC
GACGGCGGCGCCCCGCCGCTCGCCAACGAGCTGAAGAGATACTACGGCAAGGCCCCCGCCGTGGTGGAGCTCTGCGTGCG
CGCCGGCGCGCCCGTGCCCGCGCAGTACAGGAGCATGATGCGGCTCGACGTCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis