Browse Element(s) Details


OsAffx.28880.1.S1_s_at

Description tigr:9635.m04300
TID=OsAffx.28880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome oxidase c subunit VIb, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4291011/11Cytochrome c oxidase subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed
LOC_Os07g42910OsAffx.28880.1.S1_s_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910Os.16582.1.S1_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910OsAffx.28880.1.S1_at10/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42940Os.16704.1.S1_at11/117+25716112..25720314Serine/threonine-protein kinase SAPK2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0004129molecular_functioncytochrome-c oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28880.1.S1_s_at--698--7791Chr07:25691353..25691377 (25 bp)
GGTCCCTGTGGAAAATTCATCCTCT
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--66--10551Chr07:25691338..25691362 (25 bp)
TTCATCCTCTGAAAAATCTTCTGAT
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--611--2131Chr07:25691312..25691336 (25 bp)
ACAGTGTGGCTGAAGTTGTTCCTGA
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--58--4751Chr07:25691280..25691304 (25 bp)
GCTGAAACACCAGCAGCTCAGGACA
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--763--951Chr07:25691261..25691285 (25 bp)
AGGACACCACTTCTGTTGTTGAGGA
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--260--5551Chr07:25691229..25691253 (25 bp)
GAAACTCCCGAGATGACAGCATCCT
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--396--5651Chr07:25691215..25691239 (25 bp)
GACAGCATCCTCTGAGAAGCCAGAA
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--276--131Chr07:25691036..25691056 (21 bp)
ATTAAGATTGAGACGGCTCCCGCTG
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--972--5211Chr07:25690862..25690982 (25 bp)
GAATATCATAGGTGTGTAGCTGCAA
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--904--1331Chr07:25690833..25690857 (25 bp)
AGAGGGTGCTCCTGAGTGTGAAAAA
LOC_Os07g42910
OsAffx.28880.1.S1_s_at--953--3111Chr07:25690801..25690825 (25 bp)
AATATTATCGATCACTTTGCCCAAG
LOC_Os07g42910
Target Sequence 
GGTCCCTGTGGAAAATTCATCCTCTGAAAAATCTTCTGATAACAGTGTGGCTGAAGTTGTTCCTGAGAAAGATGCTGAAA
CACCAGCAGCTCAGGACACCACTTCTGTTGTTGAGGACAAAAGTGAAACTCCCGAGATGACAGCATCCTCTGAGAAGCCA
GAAGAAGAGGGGAGCAATGCTGCTACAGAGGAAAGCAATGAGGCTGAAGAGGAAACAATTGATGAGAAGCCAGAAATTAA
GATTGAGACGGCTCCCGCTGATTTTCGTTTCCCAACAACAAATCAAACAAGGCATTGCTTCACACGCTATATTGAATATC
ATAGGTGTGTAGCTGCAAAAGGAGAGGGTGCTCCTGAGTGTGAAAAATTTGCAAAATATTATCGATCACTTTGCCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28880.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis