Browse Element(s) Details


OsAffx.28962.1.S1_at

Description tigr:9635.m04960
TID=OsAffx.28962.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4905011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49010Os.27285.1.S1_at11/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49010Os.23591.1.A1_at1/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49020NANA7+29349956..29350222expressed protein
LOC_Os07g49030Os.7312.1.S1_a_at10/117+29351351..29355429PHD-finger family protein, expressed
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49050OsAffx.28962.1.S1_at11/117+29368854..29370005hypothetical protein
LOC_Os07g49060NANA7+29371026..29371406hypothetical protein
LOC_Os07g49070OsAffx.10352.1.S1_at11/117+29374568..29379279hypothetical protein
LOC_Os07g49080Os.5154.1.S1_at11/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49080OsAffx.16668.1.S1_at1/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49090OsAffx.10351.1.S1_at11/117+29383997..29384911hypothetical protein
LOC_Os07g49100Os.34354.1.S1_at8/117+29386369..29388415Pectinesterase family protein, expressed
LOC_Os07g49110Os.15204.1.S1_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.15204.2.S1_x_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_x_at10/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_at9/117+29390754..29400208D-alanine ligase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28962.1.S1_at--759--1871Chr07:29369422..29369446 (25 bp)
ACGAGATCGTGTCGTACGCCGTGCA
LOC_Os07g49050
OsAffx.28962.1.S1_at--641--9031Chr07:29369354..29369378 (25 bp)
TGCAGCAGAAGCGATGGTGGCAACA
LOC_Os07g49050
OsAffx.28962.1.S1_at--47--631Chr07:29369273..29369297 (25 bp)
ATGCTGCCATTCGAGAGGCAAGGCT
LOC_Os07g49050
OsAffx.28962.1.S1_at--96--2691Chr07:29369129..29369153 (25 bp)
AAGCTGTTTTGCAAGGATCCACAGG
LOC_Os07g49050
OsAffx.28962.1.S1_at--683--6631Chr07:29369088..29369112 (25 bp)
GTTGTCAGGAATAAGGCCCAGCCTT
LOC_Os07g49050
OsAffx.28962.1.S1_at--127--1691Chr07:29369069..29369093 (25 bp)
AGCCTTGCGTACATGCAGGGCAGCG
LOC_Os07g49050
OsAffx.28962.1.S1_at--868--1011Chr07:29369042..29369066 (25 bp)
AGGTTCTGCCTCCTCGAGTGCGTGC
LOC_Os07g49050
OsAffx.28962.1.S1_at--573--1071Chr07:29369011..29369035 (25 bp)
AGGGAGTCGACTGGAAGCACGCCTT
LOC_Os07g49050
OsAffx.28962.1.S1_at--916--8511Chr07:29369000..29369024 (25 bp)
TGGAAGCACGCCTTCGGCGACGATG
LOC_Os07g49050
OsAffx.28962.1.S1_at--317--231Chr07:29368949..29368973 (25 bp)
ATATTCGGCCTCAAGTACGACCACC
LOC_Os07g49050
OsAffx.28962.1.S1_at--652--3731Chr07:29368884..29368908 (25 bp)
CTACATTGTCTCCAAGCATAACTCC
LOC_Os07g49050
Target Sequence 
ACGAGATCGTGTCGTACGCCGTGCACCCGGACCAACGCACCTTCTTCGTCTCCGTCAAGGAGGCCTTCTGCAGCAGAAGC
GATGGTGGCAACAAGGGGACCTTCTCCTTCGACACCAAGCACTGCGAGTGGAGGTGGCACGGCGACTGGATGCTGCCATT
CGAGAGGCAAGGCTACTACGACGCCGAGCTGGACGCGTGGGTGGGTCTCCGCCTCACCGATGGCCGCGTCTGCGCCTGCA
GAGTCGCCTCCCGCAGCAGCAGCGCCCCGCCGGAGTGGAAGCTGCTCCAGGAGAAGCTGTTTTGCAAGGATCCACAGGAG
AGGCAGCTGATGGCGTTGTCAGGAATAAGGCCCAGCCTTGCGTACATGCAGGGCAGCGGCAGGTTCTGCCTCCTCGAGTG
CGTGCTGCGAGAGGGAGTCGACTGGAAGCACGCCTTCGGCGACGATGCCCATGGCTGCCTGCTCCGCCTCACCATATTCG
GCCTCAAGTACGACCACCAGGGGGAACTGCACACTTCCATCCACCGCACCAATGCCTCCTACATTGTCTCCAAGCATAAC
TCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis