Browse Element(s) Details


OsAffx.29174.1.S1_at

Description tigr:9636.m01295
TID=OsAffx.29174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1313011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13090OsAffx.16971.1.S1_at11/118+7771507..7772546BTB/POZ domain containing protein
LOC_Os08g13100OsAffx.16972.1.S1_at11/118+7774631..7776083hypothetical protein
LOC_Os08g13110OsAffx.16973.1.S1_at10/118+7776999..7777499hypothetical protein
LOC_Os08g13120Os.40855.2.S1_x_at3/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40855.4.S1_x_at2/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40360.1.S1_x_at1/118+7783454..7784605hypothetical protein
LOC_Os08g13130OsAffx.29174.1.S1_at11/118+7791882..7796733hypothetical protein
LOC_Os08g13140Os.26886.2.S1_s_at7/118+7802214..7802666hypothetical protein
LOC_Os08g13140Os.26886.6.S1_s_at4/118+7802214..7802666hypothetical protein
LOC_Os08g13150Os.26886.3.S1_x_at5/118+7802865..7809053transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13160OsAffx.5799.1.S1_at11/118+7813633..7814305hypothetical protein
LOC_Os08g13170NANA8+7818798..7826235retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29174.1.S1_at--954--10331Chr08:7792773..7792797 (25 bp)
TTTACCCAACCTCAGGAGTGTCGAC
LOC_Os08g13130
OsAffx.29174.1.S1_at--898--4391Chr08:7792707..7792731 (25 bp)
GCCAACGGTGACGAGCAGATCTGCA
LOC_Os08g13130
OsAffx.29174.1.S1_at--230--8071Chr08:7792630..7792654 (25 bp)
GGAGCAGGCGACATATTTGGCACCG
LOC_Os08g13130
OsAffx.29174.1.S1_at--885--4051Chr08:7792180..7792204 (25 bp)
CGATGAACCCTAGCCCATTGATGTG
LOC_Os08g13130
OsAffx.29174.1.S1_at--4--2211Chr08:7792145..7792169 (25 bp)
ACAACTCATAACTTGCTTCGTGCTG
LOC_Os08g13130
OsAffx.29174.1.S1_at--247--3651Chr08:7792130..7792154 (25 bp)
CTTCGTGCTGCTGACTGTTATGGGC
LOC_Os08g13130
OsAffx.29174.1.S1_at--1037--8331Chr08:7792099..7792123 (25 bp)
GGCTGAAGGCCATCTGCGAGACGAA
LOC_Os08g13130
OsAffx.29174.1.S1_at--1006--4591Chr08:7792084..7792108 (25 bp)
GCGAGACGAAGCTTTGCCTGGATAT
LOC_Os08g13130
OsAffx.29174.1.S1_at--591--6251Chr08:7792044..7792068 (25 bp)
GATGGTTATATTGCTTCTCGCTGAT
LOC_Os08g13130
OsAffx.29174.1.S1_at--1060--5071Chr08:7792017..7792041 (25 bp)
GCACCAGTGCGACATGCTCAAACAG
LOC_Os08g13130
OsAffx.29174.1.S1_at--323--10551Chr08:7791980..7792004 (25 bp)
TTCATTGCCAATCCGAACACACTGG
LOC_Os08g13130
Target Sequence 
TTTACCCAACCTCAGGAGTGTCGACAGCGGGAGTGGGAGACCAGCGCGTGGATCCGCCGTCTCCCCGCCAACGGTGACGA
GCAGATCTGCAGCCCCCGCCCTCGTAGCGACCGCGGAGTGCGGATTTGCCGCCCCCAACCTCGGGAGCAGGCGACATATT
TGGCACCGCCGCCCTCGGGAGCGATCACAGCCACGGCGACGCCGGGATGGATCTACCAACAACAAGAGCAACTTGAACAA
GTGATGGATTCGTCGATGAACCCTAGCCCATTGATGTGGTTTGATAACACAACTCATAACTTGCTTCGTGCTGCTGACTG
TTATGGGCTGGAAAGGCTGAAGGCCATCTGCGAGACGAAGCTTTGCCTGGATATTGATGTGAAGAGCGTGATGGTTATAT
TGCTTCTCGCTGATCAGCACCAGTGCGACATGCTCAAACAGGCATGCTTCTCCTTCATTGCCAATCCGAACACACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis