Browse Element(s) Details


OsAffx.29281.1.S1_at

Description tigr:9636.m01946
TID=OsAffx.29281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1977011/11hypothetical protein
LOC_Os03g567401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19740NANA8+11810195..11811119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19750OsAffx.1755.1.S1_x_at3/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.6502.1.A1_at2/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.1755.1.S1_at2/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.21269.1.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.29073.1.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.8747.3.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.26189.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.55580.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.6502.1.A1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.31613.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19760NANA8+11823421..11825833retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19770OsAffx.29281.1.S1_at11/118+11834794..11839017hypothetical protein
LOC_Os08g19780Os.52794.1.S1_at3/118+11842913..11843542hypothetical protein
LOC_Os08g19790NANA8+11844467..11845412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19800OsAffx.5878.1.S1_at10/118+11848173..11849990hypothetical protein
LOC_Os08g19810OsAffx.17076.1.S1_at11/118+11850564..11850839hypothetical protein
LOC_Os08g19820OsAffx.17077.1.S1_at11/118+11853158..11855233hypothetical protein
LOC_Os08g19830Os.36955.1.S1_at11/118+11863639..11873188Ubiquitin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29281.1.S1_at--608--1271Chr08:11835255..11835279 (25 bp)
AGATACTGGCAGCTATCTGGACTGC
LOC_Os08g19770
OsAffx.29281.1.S1_at--12--8131Chr08:11835237..11835261 (25 bp)
GGACTGCCTTGTTGTCATGCCTTAA
LOC_Os08g19770
OsAffx.29281.1.S1_at--134--7131Chr08:11835224..11835248 (25 bp)
GTCATGCCTTAAGTGCTATTTGTAA
LOC_Os08g19770
OsAffx.29281.1.S1_at--1043--2831Chr08:11835201..11835225 (25 bp)
AAGTCAGGACATGCCACAAATGGTT
LOC_Os08g19770
OsAffx.29281.1.S1_at--269--811Chr08:11835182..11835206 (25 bp)
ATGGTTTTATTGCTCAAGGCTATTC
LOC_Os08g19770
OsAffx.29281.1.S1_at--440--271Chr08:11835136..11835160 (25 bp)
ATATGATCATTGCATGGAGCCTTTG
LOC_Os08g19770
OsAffx.29281.1.S1_at--744--1331Chr08:11835101..11835125 (25 bp)
AGAGGTGGCCTACATCTGATCATCA
LOC_Os08g19770
OsAffx.29281.1.S1_at--894--2651Chr08:11835072..11835096 (25 bp)
AAGCCTTCGCCACCTAGTTATGTCA
LOC_Os08g19770
OsAffx.29281.1.S1_at--791--1212Chr08:11835057..11835081 (25 bp)
AGTTATGTCAAGATGCCTGGCAGGC
LOC_Os08g19770
OsAffx.29281.1.S1_at--827--151Chr08:11834961..11834985 (25 bp)
ATTATGAGGTGTGGGCTTTGCCATA
LOC_Os08g19770
OsAffx.29281.1.S1_at--286--5151Chr08:11834835..11834859 (25 bp)
GCAAAATCATCGACTGCTCATACAG
LOC_Os08g19770
Target Sequence 
AGATACTGGCAGCTATCTGGACTGCCTTGTTGTCATGCCTTAAGTGCTATTTGTAAGTCAGGACATGCCACAAATGGTTT
TATTGCTCAAGGCTATTCAATTGAAGAGTATAAGAAAACATATGATCATTGCATGGAGCCTTTGGAAGGAGAGGAGAGGT
GGCCTACATCTGATCATCACCCCAAGCCTTCGCCACCTAGTTATGTCAAGATGCCTGGCAGGCCAAAAGGAAAATCTAGG
AAGAGGAAGCCTGGTGAGAAACCTAAAGAAACTAAAATGTCAAGAGTTGGCACAATTATGAGGTGTGGGCTTTGCCATAA
AACTAAGCATAGTAGCAGGGGTTGTTCACCCAAAGAGAGGGGCAAGAAGAAAAATGCTCTTGTCACAGGAGCTAATAGAA
AAAGAAATCAACCTAATGGAGCAAAATCATCGACTGCTCATACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis