Browse Element(s) Details


OsAffx.29393.1.S1_x_at

Description tigr:9636.m02786
TID=OsAffx.29393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Xanthineuracil permeases family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2817011/11xanthine/uracil permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28130NANA8+17031293..17036644hypothetical protein
LOC_Os08g28140Os.46012.2.S1_x_at4/118+17038863..17040428hypothetical protein
LOC_Os08g28140Os.46012.3.S1_x_at1/118+17038863..17040428hypothetical protein
LOC_Os08g28140Os.27088.1.A1_x_at1/118+17038863..17040428hypothetical protein
LOC_Os08g28150OsAffx.17201.1.S1_at10/118+17051492..17053073hypothetical protein
LOC_Os08g28160OsAffx.29392.1.S1_at11/118+17054441..17055775hypothetical protein
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29393.1.S1_x_at--928--3171Chr08:17061705..17061729 (25 bp)
AATTGGGCTGCTGTTTGATGGGCTA
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--1083--211Chr08:17061729..17061753 (25 bp)
ATTTGGTACTGGAACTGGCTCCACG
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--434--8451Chr08:17061744..17061867 (25 bp)
TGGCTCCACGGTCTCTGTAGAGAAC
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--71--5491Chr08:17061864..17061888 (25 bp)
GAACATTGGTCTTCTTGGATCAACC
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--680--9871Chr08:17061911..17061935 (25 bp)
TACAGATCTCCGCTGGTTTCATGAT
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--731--6851Chr08:17062045..17062069 (25 bp)
GTTTGCTTCGATTCCATTCACAATG
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--462--4311Chr08:17062058..17062082 (25 bp)
CCATTCACAATGTTTGCCGCCATAT
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--579--4531Chr08:17062073..17062097 (25 bp)
GCCGCCATATACTGCGTCATGTTTG
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--275--8851Chr08:17062543..17062567 (25 bp)
TGATCGTCGCGGTGATCCTCGACAA
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--896--1011Chr08:17062620..17062644 (25 bp)
AGGTTCAGGACGTTCAGAGGCGACA
LOC_Os08g28170
OsAffx.29393.1.S1_x_at--697--8191Chr08:17062648..17062672 (25 bp)
GGAATGAGGAGTTCTACACCCTGCC
LOC_Os08g28170
Target Sequence 
AATTGGGCTGCTGTTTGATGGGCTATTTGGTACTGGAACTGGCTCCACGGTCTCTGTAGAGAACATTGGTCTTCTTGGAT
CAACCAGGATTGGCAGCAGAAGAGTGATACAGATCTCCGCTGGTTTCATGATCTTCTTCTCCATTCTAGGGAGATTTGGG
GCTCTGTTTGCTTCGATTCCATTCACAATGTTTGCCGCCATATACTGCGTCATGTTTGGATATGTTGGTGCAGTGGGGCT
CTCCTTCATGCAGTTCACCAACATGAACTCGATGCGCAGCCTCTTCATCATCGGCGTCTCGCTGTTCCTCGGCATTTCCA
TCCCGGAGTACTTCTTCCGCTACACCATGAGCGCTCTGCACGGCCCTGCACACACCAGGGCAGGATGGTTCAATGACTAC
ATCAACACCGTCTTCTCCTCGCCCCCGACCGTCGGTCTGATCGTCGCGGTGATCCTCGACAACACCCTGGAGGTGAGGGA
TGCGGCGAGGGACCGGGGGATGCCATGGTGGGCGAGGTTCAGGACGTTCAGAGGCGACAGCCGGAATGAGGAGTTCTACA
CCCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29393.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis