Browse Element(s) Details


OsAffx.29409.1.S1_at

Description tigr:9636.m02873
TID=OsAffx.29409.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2901011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28980Os.26049.1.S2_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980Os.26049.1.S1_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980OsAffx.26666.1.S1_x_at1/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28990Os.41695.15.S1_s_at11/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.2.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.3.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.5.S1_x_at9/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.4.S1_x_at1/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g29000OsAffx.19542.3.S1_x_at4/118+17616312..17621988retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29010OsAffx.29409.1.S1_at11/118+17624162..17625507expressed protein
LOC_Os08g29020Os.26928.1.S1_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.1.S3_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.1.S2_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.3.S1_x_at10/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29030OsAffx.29410.1.S1_at11/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.13325.1.S1_at2/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.29576.5.S1_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.10155.1.S1_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.10155.1.S1_x_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29040OsAffx.17220.1.S1_at11/118+17648439..17650184Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29409.1.S1_at--714--8311Chr08:17624183..17624207 (25 bp)
GGCTCCGGCGCAACCACGGTGCAGT
LOC_Os08g29010
OsAffx.29409.1.S1_at--732--3891Chr08:17624261..17624285 (25 bp)
CTGGGCGTGCCATCAGCGCGTGCTT
LOC_Os08g29010
OsAffx.29409.1.S1_at--1091--7171Chr08:17624357..17624381 (25 bp)
GTCTGGGCTTGTGCCGACTGTGATC
LOC_Os08g29010
OsAffx.29409.1.S1_at--838--4091Chr08:17624371..17624395 (25 bp)
CGACTGTGATCTCCACCAATCGGCA
LOC_Os08g29010
OsAffx.29409.1.S1_at--357--2591Chr08:17624452..17624476 (25 bp)
AACGAGTGTGGAGAGAGGATTTCAA
LOC_Os08g29010
OsAffx.29409.1.S1_at--968--10393Chr12:6713451..6713475 (25 bp)
TTTTGCAATTCATTCAAGGAGATTC
NONE
OsAffx.29409.1.S1_at--917--2331Chr08:17624511..17624535 (25 bp)
AAAGAGTTCTCTACCTTCTTCTTCA
LOC_Os08g29010
OsAffx.29409.1.S1_at--588--7851Chr08:17625099..17625123 (25 bp)
GGTAGTTTATTCAATTTCATTGTCC
LOC_Os08g29010
OsAffx.29409.1.S1_at--462--10531Chr08:17625114..17625138 (25 bp)
TTCATTGTCCAACAATTTGCCTTAA
LOC_Os08g29010
OsAffx.29409.1.S1_at--291--4871Chr08:17625256..17625280 (25 bp)
GCTAGGCATGTTTGTAAGGTTAATA
LOC_Os08g29010
OsAffx.29409.1.S1_at--980--2251Chr08:17625138..17625349 (25 bp)
AAATATATCTAATAATGTCCTTGGG
LOC_Os08g29010
Target Sequence 
GGCTCCGGCGCAACCACGGTGCAGTGGTGCGGCTGCATGGCGTCCTGGCCCCGGCGCGACCACGGCGCGACGGTGCGGCT
GGGCGTGCCATCAGCGCGTGCTTGCGGCCGGACGCGTCGCCGGCGCGGGTGCGCGGCCGGACGCGTCGCCGGCGCGGGTG
CGCGGCCGGCGCGTGTCTGGGCTTGTGCCGACTGTGATCTCCACCAATCGGCATACGCCGGCGACTCCGAGTCTGCGGTG
GTGGATTTCATCGGGAACGGCAAAAACGGAACGAGTGTGGAGAGAGGATTTCAATTTTGCAATTCATTCAAGGAGATTCA
AAGGGATCAAAGAGTTCTCTACCTTCTTCTTCATGTCTCGNNANCTGGTAGTTTATTCAATTTCATTGTCCAACAATTTG
CCTTAAAATATCTTAGTGATTGTATTATAGCTAGGCATGTTTGTAAGGTTAATATCGAAAATATATCTAATAATGTCCTT
GGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis