Browse Element(s) Details


OsAffx.29419.2.S1_x_at

Description tigr:9629.m06199
TID=OsAffx.29419.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6275011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62680OsAffx.9549.1.S1_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.1.S1_s_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.2.S1_at10/111+36627105..36628976hypothetical protein
LOC_Os01g62690OsAffx.1034.2.S1_at11/111+36633985..36634734hypothetical protein
LOC_Os01g62700OsAffx.11704.1.S1_at11/111+36638034..36638339hypothetical protein
LOC_Os01g62710OsAffx.29313.1.S1_at1/111+36639787..36643050Transposable element protein, putative, MuDR
LOC_Os01g62720NANA1+36644054..36644871GRF zinc finger family protein
LOC_Os01g62730NANA1+36646856..36647065hypothetical protein
LOC_Os01g62740NANA1+36649897..36651381hypothetical protein
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein
LOC_Os01g62760Os.27906.1.S1_a_at11/111+36670797..36672863Protein phosphatase 2C, putative, expressed
LOC_Os01g62770Os.49935.1.S1_at11/111+36672962..36676394expressed protein
LOC_Os01g62770OsAffx.11273.2.S1_at1/111+36672962..36676394expressed protein
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29419.2.S1_x_at--798--5411Chr01:36654526..36654548 (23 bp)
GAAGCGAAACTGCTGTCGTTGCATT
LOC_Os01g62750
OsAffx.29419.2.S1_x_at--364--631Chr01:36654490..36654514 (25 bp)
ATGCTACACAGTTCCACGCTGAAAA
LOC_Os01g62750
OsAffx.29419.2.S1_x_at--483--10532Chr12:21535746..21535933 (25 bp)
TTCTCTCATAAGCAGGTGGTAAGGG
NONE
OsAffx.29419.2.S1_x_at--713--4352Chr12:21536004..21536133 (25 bp)
CCACGAAGCCTTGGGCAACAGCTAT
NONE
OsAffx.29419.2.S1_x_at--336--992Chr12:21536153..21536177 (25 bp)
AGGATTTAGTCCCTGCTGAAGCCTG
NONE
OsAffx.29419.2.S1_x_at--249--2671Chr01:36653812..36653836 (25 bp)
AAGCCTGGTGGTACATAGCATGCAA
LOC_Os01g62750
OsAffx.29419.2.S1_x_at--119--5452Chr12:21536754..21536778 (25 bp)
GAACCGCACACGATAATTGGCTCTT
NONE
OsAffx.29419.2.S1_x_at--410--8612Chr12:21536809..21536830 (22 bp)
TGGTGCTTCCAGATCCAAAGGTCCT
NONE
OsAffx.29419.2.S1_x_at--420--2311Chr01:36652938..36652960 (23 bp)
AAAGGTCCTGGCTATGGCACAACCA
LOC_Os01g62750
OsAffx.29419.2.S1_x_at--203--6132Chr12:21537391..21537415 (25 bp)
GAGGGCTCCATATAATATCACCCCA
NONE
OsAffx.29419.2.S1_x_at--816--2352Chr12:21537418..21537442 (25 bp)
AAAGCGGTCTTTTGCACCTGGCATG
NONE
Target Sequence 
GAAGCGAAACTGCTGTCGTTGCATTGTGGGGTGCCCATGCTACACAGTTCCACGCTGAAAACTTACAGCAGCAACCAGAC
CATGGACCTGTTGTTATATTGTTTGTTGGATTAACTGTTAAATTCCGAGACGGAAACAATTTCTCTCATAAGCAGGTGGT
AAGGGCAATAGAGCCGAACTTTGGTCAGAAAGAAGCTGTGCATGTAAAAGTTTTTGATATCTGTGACCTTAATCCCCACG
AAGCCTTGGGCAACAGCTATATTGTCAAGATAGCCATCAAGGATTTAGTCCCTGCTGAAGCCTGGTGGTACATAGCATGC
AACACCACTGATGCAATTGAACCGCACACGATAATTGGCTCTTCTCTCCAATCTATGACACCTTCTACACCACTGGTGCT
TCCAGATCCAAAGGTCCTGGCTATGGCACAACCAGACAAAAAACATAAATCTTCTGTAATTGATGAGGATCTTGCTCAGG
AAGGCCCCCAAAATGACTTGAGGGCTCCATATAATATCACCCCACCAAAGCGGTCTTTTGCACCTGGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29419.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis