Browse Element(s) Details


OsAffx.29536.5.S1_x_at

Description tigr:9629.m07058
TID=OsAffx.29536.5
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7137011/11hypothetical protein
LOC_Os08g437103/11transposon protein, putative, unclassified
LOC_Os06g513401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g375101/11transposon protein, putative, unclassified
LOC_Os02g511901/11transposon protein, putative, unclassified
LOC_Os08g012001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71330Os.53046.1.S1_at11/111+41670176..41671113expressed protein
LOC_Os01g71330Os.53046.1.S1_s_at11/111+41670176..41671113expressed protein
LOC_Os01g71340Os.2416.1.S1_a_at11/111+41673497..41675222Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative, expressed
LOC_Os01g71350Os.32115.1.S1_at11/111+41676580..41677967Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71360OsAffx.6133.2.A1_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71360Os.29856.1.S1_x_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71370OsAffx.29536.5.S1_x_at11/111+41689753..41690703hypothetical protein
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420Os.13966.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.13966.1.S1_x_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_x_at9/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29536.5.S1_x_at--279--4713Chr01:41690219..41690243 (25 bp)
GCGGCGCGGAGCTCCTTGTCGACTC
LOC_Os01g71370
OsAffx.29536.5.S1_x_at--661--10814Chr10:20242445..20242466 (22 bp)
TTGTCGACTCCTCGTGCTCGCTAGC
NONE
OsAffx.29536.5.S1_x_at--405--4235Chr10:21453539..21453563 (25 bp)
CCGACACGCACGACGGCAGAGGAGG
NONE
OsAffx.29536.5.S1_x_at--625--8272Chr01:41690423..41690447 (25 bp)
GGCAGGTGGCGCGAGCGGTCAAGCG
LOC_Os01g71370
OsAffx.29536.5.S1_x_at--641--8393Chr01:41690430..41690454 (25 bp)
GGCGCGAGCGGTCAAGCGGCACAGA
LOC_Os01g71370
OsAffx.29536.5.S1_x_at--658--5891Chr01:41690435..41690459 (25 bp)
GAGCGGTCAAGCGGCACAGAGGTGG
LOC_Os01g71370
OsAffx.29536.5.S1_x_at--116--5134Chr05:18613949..18613968 (20 bp)
GCACAGAGGTGGTGACGCCGGCGGT
NONE
OsAffx.29536.5.S1_x_at--676--108314Chr10:21453785..21453809 (25 bp)
TTGGTCCCTTGCCATAATGAGGAGA
NONE
OsAffx.29536.5.S1_x_at--830--1332Chr01:41690554..41690578 (25 bp)
AGAGGGAGAGCAGCTGCTTCTCCTA
LOC_Os01g71370
OsAffx.29536.5.S1_x_at--445--4911Chr01:41690569..41690593 (25 bp)
GCTTCTCCTACTCTTGGACGGGTGC
LOC_Os01g71370
OsAffx.29536.5.S1_x_at--545--9251Chr01:41690574..41690598 (25 bp)
TCCTACTCTTGGACGGGTGCGGCGT
LOC_Os01g71370
Target Sequence 
GCGGCGCGGAGCTCCTTGTCGACTCCTCGTGCTCGCTAGCTCNCCGACACGCACGACGGCAGAGGAGGGCGAGAACGACN
ACGAACGGCGAGNCGGCAGTGGTGTGNNGNNGNNGNNNNNNNNGNANNNANNNNNGGGNGNNNNNGNNNNNNAGGCAGGT
GGCGCGAGCGGTCAAGCGGCACAGAGGTGGTGACGCCGGCGGTGGTCGGGGAAAAGGAAAAAGAAGGGGGAAAGGGGCTT
GGTCCCTTGCCATAATGAGGAGAGGGAGAGTGAGGAGGAGGAGGAGAGGGAGAGCAGCTGCTTCTCCTACTCTTGGACGG
GTGCGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29536.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis