Browse Element(s) Details


OsAffx.29587.1.S1_s_at

Description tigr:9636.m03857
TID=OsAffx.29587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=histone H2B
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3830011/11Histone H2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38230NANA8+24103317..24103630hypothetical protein
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29587.1.S1_s_at--321--2831Chr08:24129006..24129030 (25 bp)
AAGTTCACCAGCTCTTAGGCGCTCT
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--467--1571Chr08:24129015..24129039 (25 bp)
AGCTCTTAGGCGCTCTAGTGTAGTA
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--599--1031Chr08:24129039..24129063 (25 bp)
AGGTGTTTGGTGATTTTCTCTTCGT
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--298--6551Chr08:24129050..24129074 (25 bp)
GATTTTCTCTTCGTTTTCGTCGTAG
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--151--10631Chr08:24129065..24129089 (25 bp)
TTCGTCGTAGCGAGTCCATGGCAGC
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--941--3771Chr08:24129111..24129135 (25 bp)
CTCTGATTTCTTTCTCTTGTGTCTA
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--466--9591Chr08:24129125..24129149 (25 bp)
TCTTGTGTCTAGTGTTCCTGTCTAG
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--484--9271Chr08:24129140..24129164 (25 bp)
TCCTGTCTAGTGCTTGCTGATTACT
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--859--9771Chr08:24129166..24129190 (25 bp)
TAAGAATCTCTTGGTTGTGCCCGTT
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--712--7291Chr08:24129182..24129206 (25 bp)
GTGCCCGTTGAGTTCTGATCTTAAA
LOC_Os08g38300
OsAffx.29587.1.S1_s_at--273--2971Chr08:24129210..24129234 (25 bp)
AATGGTGATGGTTGCAACCTCTGGT
LOC_Os08g38300
Target Sequence 
AAGTTCACCAGCTCTTAGGCGCTCTAGTGTAGTAGGTGTTTGGTGATTTTCTCTTCGTTTTCGTCGTAGCGAGTCCATGG
CAGCGGTGGTAGTTGCCCTGTCGATCTCTGATTTCTTTCTCTTGTGTCTAGTGTTCCTGTCTAGTGCTTGCTGATTACTG
TAAGAATCTCTTGGTTGTGCCCGTTGAGTTCTGATCTTAAAATTAATGGTGATGGTTGCAACCTCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29587.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis