Browse Element(s) Details


OsAffx.2969.1.S1_at

Description tigr:9630.m04424
TID=OsAffx.2969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4563011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45580NANA2+27726030..27726398hypothetical protein
LOC_Os02g45590Os.57037.1.S1_at11/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45590OsAffx.12510.2.A1_at10/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45600Os.35377.1.S1_a_at11/112+27738383..27741375rac GTPase activating protein, putative, expressed
LOC_Os02g45610OsAffx.23593.1.S1_s_at1/112+27743304..27743714hypothetical protein
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45630OsAffx.2969.1.S1_at11/112+27749030..27752902hypothetical protein
LOC_Os02g45630OsAffx.17955.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45630Os.54455.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_x_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.4.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22005.1.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22811.1.S1_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45650Os.13475.1.S1_at10/112+27758787..27764901Peptidase family M48 containing protein, expressed
LOC_Os02g45660Os.49474.1.S1_at8/112+27767582..277696412-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
LOC_Os02g45670OsAffx.2971.1.S1_at11/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45670Os.12484.1.S1_at5/112+27770790..27775529myb family transcription factor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2969.1.S1_at--10--10752Chr02:34839331..34839352 (22 bp)
TTGCACAGGGCTGCGTCAGAGCACC
NONE
OsAffx.2969.1.S1_at--998--2371Chr02:27750053..27750074 (22 bp)
AAACGTACAGTTGACGTCACCGCTG
LOC_Os02g45630
OsAffx.2969.1.S1_at--485--10731Chr02:27750043..27750067 (25 bp)
TTGACGTCACCGCTGTTAATCCTGA
LOC_Os02g45630
OsAffx.2969.1.S1_at--190--8791Chr02:27750030..27750054 (25 bp)
TGTTAATCCTGACGAGCTGTGCCCT
LOC_Os02g45630
OsAffx.2969.1.S1_at--940--1611Chr02:27750016..27750040 (25 bp)
AGCTGTGCCCTTTGTCGAAGGCTAG
LOC_Os02g45630
OsAffx.2969.1.S1_at--1126--6851Chr02:27749582..27750013 (25 bp)
GTATTGCCAGAAGCATTTCTTGGAG
LOC_Os02g45630
OsAffx.2969.1.S1_at--235--2031Chr02:27749538..27749562 (25 bp)
ACTACTACTAGCACATCGGTCAGCG
LOC_Os02g45630
OsAffx.2969.1.S1_at--32--9671Chr02:27749519..27749543 (25 bp)
TCAGCGGCGACCGTGATGACGCAAG
LOC_Os02g45630
OsAffx.2969.1.S1_at--1031--5971Chr02:27749471..27749495 (25 bp)
GAGACAAGCGCTTGCGAGCCAAGCA
LOC_Os02g45630
OsAffx.2969.1.S1_at--1133--10791Chr02:27749104..27749128 (25 bp)
TTGTTATTCCCCAATGTCGCATGTA
LOC_Os02g45630
OsAffx.2969.1.S1_at--803--411Chr02:27749063..27749087 (25 bp)
ATCATGGTCATGGACGCCCAAGTTC
LOC_Os02g45630
Target Sequence 
TTGCACAGGGCTGCGTCAGAGCACCCGCAATGGTAAACGTACAGTTGACGTCACCGCTGTTAATCCTGACGAGCTGTGCC
CTTTGTCGAAGGCTAGGAGTATTGCCAGAAGCATTTCTTGGAGATCAGAAATGAGTGTATATACTACTACTAGCACATCG
GTCAGCGGCGACCGTGATGACGCAAGGGAGGATGCCGGAGACGGGAGTGGAGACAAGCGCTTGCGAGCCAAGCAGGCTGC
GGAGGAGGCGACCTGCATCGCGCGCGCGCTAGCTGTCTCTTCCGATGGCCCCGGCCTTTTGTTATTCCCCAATGTCGCAT
GTACTACATCATTACATGCATCATGGTCATGGACGCCCAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis