Browse Element(s) Details


OsAffx.2971.1.S1_at

Description tigr:9630.m04428
TID=OsAffx.2971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-related DNA-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4567011/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45630OsAffx.2969.1.S1_at11/112+27749030..27752902hypothetical protein
LOC_Os02g45630OsAffx.17955.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45630Os.54455.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_x_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.4.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22005.1.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22811.1.S1_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45650Os.13475.1.S1_at10/112+27758787..27764901Peptidase family M48 containing protein, expressed
LOC_Os02g45660Os.49474.1.S1_at8/112+27767582..277696412-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
LOC_Os02g45670OsAffx.2971.1.S1_at11/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45670Os.12484.1.S1_at5/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45680NANA2+27778351..27786356retrotransposon protein, putative, unclassified
LOC_Os02g45690Os.6297.1.S1_at11/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45690OsAffx.22034.1.S1_at1/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45700Os.6297.2.S1_at10/112+27797544..27799762fringe protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2971.1.S1_at--464--2671Chr02:27773807..27773831 (25 bp)
AAGCGTAAAGCTGCTCATCCATACC
LOC_Os02g45670
OsAffx.2971.1.S1_at--585--931Chr02:27773629..27773653 (25 bp)
AGGCAGATTCATCTTCCATGCTTAG
LOC_Os02g45670
OsAffx.2971.1.S1_at--530--3151Chr02:27773564..27773588 (25 bp)
AATTCTATCCCACCAATTGTAGCCT
LOC_Os02g45670
OsAffx.2971.1.S1_at--978--31Chr02:27773549..27773573 (25 bp)
ATTGTAGCCTCATCCATGGTGAAAG
LOC_Os02g45670
OsAffx.2971.1.S1_at--761--6891Chr02:27772888..27772912 (25 bp)
GTATACAGCTTCTTGGGCAGCGTTT
LOC_Os02g45670
OsAffx.2971.1.S1_at--1109--3371Chr02:27772871..27772895 (25 bp)
CAGCGTTTTCGATCCAAGCACAAGT
LOC_Os02g45670
OsAffx.2971.1.S1_at--854--2211Chr02:27772852..27772876 (25 bp)
ACAAGTGGCCATTTACAGAAACTAA
LOC_Os02g45670
OsAffx.2971.1.S1_at--521--5591Chr02:27772519..27772543 (25 bp)
GAAATCTCTCCATCAATTTGACTAG
LOC_Os02g45670
OsAffx.2971.1.S1_at--274--211Chr02:27772504..27772528 (25 bp)
ATTTGACTAGTCCTGATTTTGAAGA
LOC_Os02g45670
OsAffx.2971.1.S1_at--1014--2851Chr02:27771144..27771425 (25 bp)
AAGTGCTCCATTCATAATGTGTAAG
LOC_Os02g45670
OsAffx.2971.1.S1_at--1020--10091Chr02:27770895..27771126 (25 bp)
TAGGCTTGCACAGCTGGTGATGGCA
LOC_Os02g45670
Target Sequence 
AAGCGTAAAGCTGCTCATCCATACCCTCAAAAGGCCTCCAAAAATGAGCCAGGATATACCATAAAGGCAGATTCATCTTC
CATGCTTAGGAACTCAGGCATGAATGCCACTGTTTCGTCATGGACACACAATTCTATCCCACCAATTGTAGCCTCATCCA
TGGTGAAAGTTATGCCAGATTTTGCACAAGTATACAGCTTCTTGGGCAGCGTTTTCGATCCAAGCACAAGTGGCCATTTA
CAGAAACTAAAGGAGATGAATCCAATTGATGTTGAGACGGCATTGTTGTTAATGAGAAATCTCTCCATCAATTTGACTAG
TCCTGATTTTGAAGATCAGAAGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGCTAGGAAGCACCAGAA
GCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATAATGTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACAG
CTGGTGATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis