Browse Element(s) Details


OsAffx.29742.3.S1_x_at

Description tigr:9630.m01523
TID=OsAffx.29742.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1621011/11transposon protein, putative, unclassified
LOC_Os06g137406/11transposon protein, putative, unclassified
LOC_Os06g139004/11transposon protein, putative, unclassified, expressed
LOC_Os09g017803/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16140OsAffx.29742.5.S1_s_at11/112+9183675..9185705transposon protein, putative, unclassified
LOC_Os02g16140OsAffx.29742.4.S1_x_at1/112+9183675..9185705transposon protein, putative, unclassified
LOC_Os02g16140Os.46314.2.S1_x_at1/112+9183675..9185705transposon protein, putative, unclassified
LOC_Os02g16140OsAffx.32036.1.S1_at1/112+9183675..9185705transposon protein, putative, unclassified
LOC_Os02g16150NANA2+9187695..9188768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16160NANA2+9191843..9192277hypothetical protein
LOC_Os02g16170Os.47999.3.S1_x_at1/112+9192966..9196433retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16180Os.45173.5.S1_x_at4/112+9198806..9199597retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16190NANA2+9199867..9204279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16200NANA2+9207188..9210329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16210OsAffx.29742.3.S1_x_at11/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.1.S1_x_at6/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.2.S1_x_at5/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.22896.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210Os.47114.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16220OsAffx.29675.1.S1_x_at11/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.4.S1_x_at6/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.2.S1_x_at4/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.3.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220Os.45229.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16230NANA2+9223456..9223827hypothetical protein
LOC_Os02g16240OsAffx.24649.3.S1_at10/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16240OsAffx.24649.1.S1_at5/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16250OsAffx.2640.1.S1_at11/112+9238437..9239234NBS-LRR disease resistance protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29742.3.S1_x_at--489--6233Chr09:541449..541473 (25 bp)
GATGGCATTCTTTGCTGTCATGTTC
LOC_Os09g01780
OsAffx.29742.3.S1_x_at--716--6311Chr02:9214203..9214227 (25 bp)
GATGACATTTGATTTTGTGGGCCAA
LOC_Os02g16210
OsAffx.29742.3.S1_x_at--244--7554Chr09:541650..541674 (25 bp)
GGGCCAAGTGAGTGACATTCCAGAA
LOC_Os09g01780
OsAffx.29742.3.S1_x_at--860--10214Chr09:541682..541706 (25 bp)
TATTGCCTAGATGGACGATGGTTAA
LOC_Os09g01780
OsAffx.29742.3.S1_x_at--222--1673Chr06:7618238..7618262 (25 bp)
AGCCTGAATTGCCTCCAGTTACAAG
LOC_Os06g13740
OsAffx.29742.3.S1_x_at--973--1012Chr06:7618309..7618333 (25 bp)
AGGTATACCAATCTGTGCACAAAAT
LOC_Os06g13740
OsAffx.29742.3.S1_x_at--418--4291Chr02:9214415..9214439 (25 bp)
CCTACCGTATGGCTCTACAGTGTAT
LOC_Os02g16210
OsAffx.29742.3.S1_x_at--436--1671Chr02:9214506..9214530 (25 bp)
AGCCCCATCTGATCCTGCAAGAGGA
LOC_Os02g16210
OsAffx.29742.3.S1_x_at--885--8213Chr06:7618486..7618975 (25 bp)
GGAATTTCAGATATCCCCTCAGCAT
NONE
OsAffx.29742.3.S1_x_at--217--2354Chr09:542017..542040 (24 bp)
AAAGCAAGGGAGACCAGTTTCAACG
NONE
OsAffx.29742.3.S1_x_at--548--1211Chr02:9214614..9214638 (25 bp)
AGTTTCAACGAGACGCAAGCCTGGG
LOC_Os02g16210
Target Sequence 
GATGGCATTCTTTGCTGTCATGTTCTGAAGGTGATGACATTTGATTTTGTGGGCCAAGTGAGTGACATTCCAGAACACTA
CATATTGCCTAGATGGACGATGGTTAAAGAGCCTGAATTGCCTCCAGTTACAAGCATTGGTGAACAAATGCAATTGCCCC
CTAAATCTCTGAAGCTAATCAGGTATACCAATCTGTGCACAAAATTTACACAGATTGCAAAAGATGCATCAAGCAACGAG
AAAGCCTACCGTATGGCTCTACAGTGTATGAGCTCAATGACTGATGACTTAGCAGCTATGAAGCAGAGTAGAAAGAAACA
GAAAAAAGCACAGCCAGCCCCATCTGATCCTGCAAGAGGAATTTCAGATATCCCCTCAGCATCAACTAACCCAACACTAC
AGATAAATGACCCCCCCCCCATCATACAAAAGCAAGGGAGACCAGTTTCAACGAGACGCAAGCCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29742.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis