Browse Element(s) Details


OsAffx.29764.1.S1_x_at

Description tigr:9637.m00620
TID=OsAffx.29764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0849011/11nodulin MtN3 protein, putative
LOC_Os12g078602/11MtN3/saliva family protein
LOC_Os09g082701/11nodulin MtN3 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08440OsAffx.25952.1.S1_s_at2/119+4400212..4406611MtN3/saliva family protein
LOC_Os09g08440OsAffx.29755.5.S1_x_at1/119+4400212..4406611MtN3/saliva family protein
LOC_Os09g08450Os.44324.1.A1_at11/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450OsAffx.29755.3.S1_x_at7/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450OsAffx.29755.4.S1_x_at6/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450OsAffx.29755.3.S1_at5/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450OsAffx.29755.2.S1_x_at4/119+4407658..4410656Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08460OsAffx.30941.9.S1_x_at9/119+4411239..4416051transposon protein, putative, unclassified
LOC_Os09g08460OsAffx.30941.5.S1_x_at9/119+4411239..4416051transposon protein, putative, unclassified
LOC_Os09g08460OsAffx.30941.2.S1_x_at7/119+4411239..4416051transposon protein, putative, unclassified
LOC_Os09g08460OsAffx.30941.1.S1_x_at6/119+4411239..4416051transposon protein, putative, unclassified
LOC_Os09g08470Os.51634.1.S1_at2/119+4419207..4425072retrotransposon protein, putative, unclassified, expressed
LOC_Os09g08480OsAffx.6208.1.S1_at11/119+4425809..4427345expressed protein
LOC_Os09g08490OsAffx.29764.1.S1_x_at11/119+4428270..4428673nodulin MtN3 protein, putative
LOC_Os09g08490OsAffx.6203.1.S1_x_at1/119+4428270..4428673nodulin MtN3 protein, putative
LOC_Os09g08500OsAffx.20858.1.S1_x_at10/119+4435298..4437641hypothetical protein
LOC_Os09g08500OsAffx.20858.4.S1_x_at7/119+4435298..4437641hypothetical protein
LOC_Os09g08510Os.11575.4.S1_x_at11/119+4438508..4440409transposon protein, putative, Pong sub-class
LOC_Os09g08510Os.11575.2.S1_a_at11/119+4438508..4440409transposon protein, putative, Pong sub-class
LOC_Os09g08510Os.11575.3.S1_x_at8/119+4438508..4440409transposon protein, putative, Pong sub-class
LOC_Os09g08520OsAffx.29765.1.S1_at11/119+4442720..4443847hypothetical protein
LOC_Os09g08530NANA9+4449944..4450905hypothetical protein
LOC_Os09g08540NANA9+4453469..4459072retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29764.1.S1_x_at--247--3571Chr09:4428490..4428514 (25 bp)
CATCAACGGTATTGGCCTCGTCATC
LOC_Os09g08490
OsAffx.29764.1.S1_x_at--791--371Chr09:4428491..4428515 (25 bp)
ATCAACGGTATTGGCCTCGTCATCG
LOC_Os09g08490
OsAffx.29764.1.S1_x_at--961--2571Chr09:4428494..4428518 (25 bp)
AACGGTATTGGCCTCGTCATCGAGG
LOC_Os09g08490
OsAffx.29764.1.S1_x_at--322--3971Chr09:4428496..4428520 (25 bp)
CGGTATTGGCCTCGTCATCGAGGCC
LOC_Os09g08490
OsAffx.29764.1.S1_x_at--532--6871Chr09:4428498..4428522 (25 bp)
GTATTGGCCTCGTCATCGAGGCCGT
LOC_Os09g08490
OsAffx.29764.1.S1_x_at--543--10232Chr09:4428499..4428523 (25 bp)
TATTGGCCTCGTCATCGAGGCCGTC
LOC_Os09g08490
OsAffx.29764.1.S1_x_at--466--1312Chr09:4428570..4428594 (25 bp)
AGATGGGAGTGGTGCTCGCTACGGA
LOC_Os09g08490
OsAffx.29764.1.S1_x_at--124--1114Chr12:3976447..3976471 (25 bp)
AGTGGTGCTCGCTACGGAGGCTCTC
LOC_Os12g07860
OsAffx.29764.1.S1_x_at--180--7314Chr12:3976451..3976475 (25 bp)
GTGCTCGCTACGGAGGCTCTCTTCA
LOC_Os12g07860
OsAffx.29764.1.S1_x_at--726--4131Chr09:4428618..4428642 (25 bp)
CGCTCGGCGTGCTTTTAGACGCGCA
LOC_Os09g08490
OsAffx.29764.1.S1_x_at--113--4791Chr09:4428619..4428643 (25 bp)
GCTCGGCGTGCTTTTAGACGCGCAC
LOC_Os09g08490
Target Sequence 
CATCAACGGTATTGGCCTCGTCATCGAGGCCGTCTACCTCACCATCTTCTTCCTCTTCTCCGACAAGAAGAACAAGAAGA
AGATGGGAGTGGTGCTCGCTACGGAGGCTCTCTTCATGGCGGCGGTGGCGCTCGGCGTGCTTTTAGACGCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29764.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis