Browse Element(s) Details


OsAffx.30177.3.S1_at

Description tigr:9637.m03211
TID=OsAffx.30177.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus receptor-like kinase RLK10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3778011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed
LOC_Os09g37720OsAffx.18035.1.S1_at11/119+21742289..21743113RNA recognition motif, putative
LOC_Os09g37730OsAffx.6507.1.S1_at11/119+21744258..21745492expressed protein
LOC_Os09g37740OsAffx.6508.1.S1_at10/119+21745676..21746754hypothetical protein
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein
LOC_Os09g37820Os.35344.18.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820Os.35344.3.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820OsAffx.22940.5.S1_x_at2/119+21785250..21790320transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30177.3.S1_at--93--1011Chr09:21761973..21761997 (25 bp)
AGGATTTTCGGCAACAACCAGCAAA
LOC_Os09g37780
OsAffx.30177.3.S1_at--402--4911Chr09:21761757..21761781 (25 bp)
GCTTCGGCGTTTTACTTCTAGAGAT
LOC_Os09g37780
OsAffx.30177.3.S1_at--734--51Chr09:21761707..21761731 (25 bp)
ATTGATCTCATTGAGGACTCCCCAA
LOC_Os09g37780
OsAffx.30177.3.S1_at--339--5711Chr09:21761525..21761549 (25 bp)
GACTCAACTATCACTGCAAACTGCT
LOC_Os09g37780
OsAffx.30177.3.S1_at--1156--6311Chr09:21761495..21761519 (25 bp)
GATGAAGTCATTCTCTGCATCCATG
LOC_Os09g37780
OsAffx.30177.3.S1_at--844--791Chr09:21761473..21761497 (25 bp)
ATGTGGCCCTCCTGTGTGTTCAGGA
LOC_Os09g37780
OsAffx.30177.3.S1_at--710--971Chr09:21761452..21761476 (25 bp)
AGGAGAATCTCAATGACAGGCCACT
LOC_Os09g37780
OsAffx.30177.3.S1_at--167--3332Chr02:35187334..35187408 (24 bp)
CACTCATGTCAGATGTTGTGCTCAT
NONE
OsAffx.30177.3.S1_at--211--2311Chr09:21761399..21761423 (25 bp)
AAAGGAAGCAAGTCACTCCCAGCTC
LOC_Os09g37780
OsAffx.30177.3.S1_at--492--3091Chr09:21761372..21761396 (25 bp)
AATAGACCGGCTTATTTTGCACAAA
LOC_Os09g37780
OsAffx.30177.3.S1_at--547--1691Chr09:21761312..21761336 (25 bp)
AGCCAGGGCGCTCAGAATTCTAACA
LOC_Os09g37780
Target Sequence 
AGGATTTTCGGCAACAACCAGCAAAAGGAAGTCACTAAACGAGTTGTTGGAACATATGGCTATATGGCTCCTGAATATGC
TATGGGAGGTATCTTTTCAATGAAGTCCGATGTCTACAGCTTCGGCGTTTTACTTCTAGAGATAGTAAGCGGTTCTAAGA
TAAGCTCTATTGATCTCATTGAGGACTCCCCAAATCTTCCAGTCTATGCATGGAATCTATGGAATGAAGGGAAGGCAGAC
ATTATGATAGACTCAACTATCACTGCAAACTGCTTATTGGATGAAGTCATTCTCTGCATCCATGTGGCCCTCCTGTGTGT
TCAGGAGAATCTCAATGACAGGCCACTCATGTCAGATGTTGTGCTCATCTTGGAGAAAGGAAGCAAGTCACTCCCAGCTC
CAAATAGACCGGCTTATTTTGCACAAAGGAACAACAATGAAGTAGAGCAAGTAAGAAATGGTAGCCAGGGCGCTCAGAAT
TCTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30177.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis