Browse Element(s) Details


OsAffx.30180.4.S1_x_at

Description tigr:9637.m03220
TID=OsAffx.30180.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to S-locus receptor-like kinase RLK10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3784011/11D-mannose binding lectin family protein
LOC_Os09g378801/11D-mannose binding lectin family protein
LOC_Os04g540201/11receptor-like kinase, putative
LOC_Os04g540101/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein
LOC_Os09g37820Os.35344.18.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820Os.35344.3.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820OsAffx.22940.5.S1_x_at2/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37830OsAffx.30178.1.S1_at11/119+21795432..21796306hypothetical protein
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37850NANA9+21822765..21824095retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30180.4.S1_x_at--883--5291Chr09:21807219..21807243 (25 bp)
GAAGGTATCTTTTCTACTAAATCCG
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--124--8071Chr09:21807146..21807170 (25 bp)
GGAGAAGCTCGACTAGTAACATCAT
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--500--4291Chr09:21807008..21807133 (25 bp)
CCTCATAGTTTTTTCGTGGAACATG
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--780--993Chr09:21844481..21844505 (25 bp)
AGGATTTGGCAGACTCATCAATTAT
LOC_Os09g37880
OsAffx.30180.4.S1_x_at--893--5333Chr09:21806920..21806944 (25 bp)
GAAGTTTTGCTCTGTATCCATGTAG
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--1032--4332Chr09:21806903..21806927 (25 bp)
CCATGTAGCACTGTTGTGTGTTCAA
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--250--5531Chr09:21806878..21806902 (25 bp)
GAAAACCCTGATGATAGACCACTTA
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--693--1371Chr09:21806863..21806887 (25 bp)
AGACCACTTATGTCATCCGTTGTGT
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--952--10811Chr09:21806844..21806868 (25 bp)
TTGTGTTCTTCCTGGACAATGGGAG
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--642--2231Chr09:21806829..21806853 (25 bp)
ACAATGGGAGTAATACTGCACTTCC
LOC_Os09g37840
OsAffx.30180.4.S1_x_at--511--9991Chr09:21806795..21806819 (25 bp)
TAGCCCTGCCTATTTTGCACAAAGG
LOC_Os09g37840
Target Sequence 
GAAGGTATCTTTTCTACTAAATCCGATGTCTATAGCTTTGGTGTGTTACTATTGGAGGTTGTAACTGGTATAAGGAGAAG
CTCGACTAGTAACATCATGGGTTTTCCAAACCTCATAGTTTTTTCGTGGAACATGTGGAAGGAAGAGAAGATGAAGGATT
TGGCAGACTCATCAATTATGGATAGTTGCTTACTGCATGAAGTTTTGCTCTGTATCCATGTAGCACTGTTGTGTGTTCAA
GAAAACCCTGATGATAGACCACTTATGTCATCCGTTGTGTTCTTCCTGGACAATGGGAGTAATACTGCACTTCCAGCCCC
AAATAGCCCTGCCTATTTTGCACAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30180.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis