Browse Element(s) Details


OsAffx.30215.1.S1_at

Description tigr:9637.m03409
TID=OsAffx.30215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable pectinesterase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3976011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed
LOC_Os09g39780Os.5492.1.S1_at11/119+22809423..22810520Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790Os.53317.1.S1_x_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39790Os.53317.2.S1_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39800OsAffx.30216.1.S1_at11/119+22817548..22817970hypothetical protein
LOC_Os09g39810OsAffx.6536.1.S1_at11/119+22821100..22821495Ethylene-responsive transcription factor 14, putative, expressed
LOC_Os09g39820OsAffx.21171.3.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.20729.1.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.21171.5.S1_x_at1/119+22828444..22834333retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30215.1.S1_at--728--3811Chr09:22805914..22805938 (25 bp)
CTCCATAGGCCGACGGGTATCCAGC
LOC_Os09g39760
OsAffx.30215.1.S1_at--1042--7551Chr09:22805968..22805992 (25 bp)
GGGCCCCGCCATAGGCATAGCCATA
LOC_Os09g39760
OsAffx.30215.1.S1_at--632--3571Chr09:22805983..22806007 (25 bp)
CATAGCCATAGCCACCAGTTGTAGT
LOC_Os09g39760
OsAffx.30215.1.S1_at--546--3431Chr09:22805998..22806022 (25 bp)
CAGTTGTAGTGTTACCGTAGGCGTA
LOC_Os09g39760
OsAffx.30215.1.S1_at--902--6131Chr09:22806313..22806337 (25 bp)
GAGGGACGGTGAGCTTGTCATCCCA
LOC_Os09g39760
OsAffx.30215.1.S1_at--246--1931Chr09:22806318..22806342 (25 bp)
ACGGTGAGCTTGTCATCCCAGGTGG
LOC_Os09g39760
OsAffx.30215.1.S1_at--223--10871Chr09:22806381..22806405 (25 bp)
TTGGCGCCGTCGTCGATCCACACGA
LOC_Os09g39760
OsAffx.30215.1.S1_at--169--4051Chr09:22806394..22806418 (25 bp)
CGATCCACACGACGGCGTAGGGCTT
LOC_Os09g39760
OsAffx.30215.1.S1_at--443--10772Chr09:22806417..22806441 (25 bp)
TTGAGGTCGCCGTTGCGCCAGTTGA
LOC_Os09g39760
OsAffx.30215.1.S1_at--577--10692Chr09:22806429..22806453 (25 bp)
TTGCGCCAGTTGACGTTCTTGAGGT
LOC_Os09g39760
OsAffx.30215.1.S1_at--1091--8932Chr09:22806439..22806463 (25 bp)
TGACGTTCTTGAGGTCGCGCGCCGA
LOC_Os09g39760
Target Sequence 
CTCCATAGGCCGACGGGTATCCAGCAGGAGGGGCCGCGGAGTACGGAGCCGGAGGGGCCCCGCCATAGGCATAGCCATAG
CCACCAGTTGTAGTGTTACCGTAGGCGTAGGGGTCACGGGACGACTGCTGGTGGTAGGGAGCAGGGTACGCCGGCGAGGG
GTCGTAGTAGCGCTTGGGCTCGCGGACGGCGACGCGGACTTCGAGGCGTCCATGGGGGCGGCCGGAGGGGCGCTTGAGGC
GGAGGGAGCGGGAGGCTCGGGCGCCTATGCCGGTGTCGGCGAGGACGTCGCGGAGCGGGAGGCGCGCGGAGCCGACGAGG
GGCTTGACGCCGTCGGTGGCGTTGGCGTGGACGACGTCGAGGTAGAGGACGGCGTCGTCGAGGCGGGTGGAGGGCGGGAG
AGGGACGGTGAGCTTGTCATCCCAGGTGGGGTTGTCGGCGTTGTCGAGGTCGACGCGGGTGGAGCACTTGGCGCCGTCGT
CGATCCACACGACGGCGTAGGGCTTGAGGTCGCCGTTGCGCCAGTTGACGTTCTTGAGGTCGCGCGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis