Browse Element(s) Details


OsAffx.30216.1.S1_at

Description tigr:9637.m03414
TID=OsAffx.30216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3980011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed
LOC_Os09g39780Os.5492.1.S1_at11/119+22809423..22810520Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790Os.53317.1.S1_x_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39790Os.53317.2.S1_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39800OsAffx.30216.1.S1_at11/119+22817548..22817970hypothetical protein
LOC_Os09g39810OsAffx.6536.1.S1_at11/119+22821100..22821495Ethylene-responsive transcription factor 14, putative, expressed
LOC_Os09g39820OsAffx.21171.3.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.20729.1.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.21171.5.S1_x_at1/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.2.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22894.1.S1_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22711.4.A1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.1.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39840NANA9+22838562..22839161retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30216.1.S1_at--69--6171Chr09:22817578..22817602 (25 bp)
GAGGATTCCCACCAACGCAGTGATA
LOC_Os09g39800
OsAffx.30216.1.S1_at--475--2591Chr09:22817591..22817615 (25 bp)
AACGCAGTGATATGGCCGCCATTGT
LOC_Os09g39800
OsAffx.30216.1.S1_at--569--10811Chr09:22817612..22817636 (25 bp)
TTGTCGCTGCTACCGTGGACCACGA
LOC_Os09g39800
OsAffx.30216.1.S1_at--1040--4971Chr09:22817638..22817662 (25 bp)
GCATCGAGGGACAATATGGCGCATC
LOC_Os09g39800
OsAffx.30216.1.S1_at--439--8871Chr09:22817687..22817711 (25 bp)
TGATGATCTCGAGCTCGCTGGCTCC
LOC_Os09g39800
OsAffx.30216.1.S1_at--1045--1791Chr09:22817760..22817784 (25 bp)
ACCGCTGTCTTACGGTGGACGAGAT
LOC_Os09g39800
OsAffx.30216.1.S1_at--946--8531Chr09:22817775..22817799 (25 bp)
TGGACGAGATTGCAAGCTCAAGTTC
LOC_Os09g39800
OsAffx.30216.1.S1_at--1125--1211Chr09:22817795..22817819 (25 bp)
AGTTCACCTTGCTCCACAGTTGCTG
LOC_Os09g39800
OsAffx.30216.1.S1_at--1061--2131Chr09:22817810..22817834 (25 bp)
ACAGTTGCTGTTATCGCGTTCGTCG
LOC_Os09g39800
OsAffx.30216.1.S1_at--808--9391Chr09:22817832..22817856 (25 bp)
TCGTCAACCAGCACCACTGTTGCAG
LOC_Os09g39800
OsAffx.30216.1.S1_at--406--10731Chr09:22817851..22817875 (25 bp)
TTGCAGCCTTGCTCAACAACCGAAG
LOC_Os09g39800
Target Sequence 
GAGGATTCCCACCAACGCAGTGATATGGCCGCCATTGTCGCTGCTACCGTGGACCACGACGCATCGAGGGACAATATGGC
GCATCGGGGGAGAAAGACAATAGATGAGATGATGATCTCGAGCTCGCTGGCTCCCTCGCCTCCCTCCTTCACTGCCATGG
ACCGCCTTCCTCATCGGGTGCCACCGCTGTCTTACGGTGGACGAGATTGCAAGCTCAAGTTCACCTTGCTCCACAGTTGC
TGTTATCGCGTTCGTCGTCAACCAGCACCACTGTTGCAGCCTTGCTCAACAACCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis