Browse Element(s) Details


OsAffx.30274.1.A1_x_at

Description gb:NM_194743.1
DB_XREF= gi:37530845
TID=OsAffx.30274.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0013J21.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g265901/11expressed protein
LOC_Os12g017201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26550OsAffx.13060.1.S1_at11/113+15144223..15144943hypothetical protein
LOC_Os03g26560Os.24831.1.S1_x_at9/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_x_at6/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.4.S1_x_at2/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_s_at1/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26570NANA3+15157634..15161856retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g26580OsAffx.30280.1.S1_x_at1/113+15162863..15164558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26590Os.54920.1.S1_at11/113+15167875..15174618expressed protein
LOC_Os03g26590Os.38751.1.A1_at3/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.30274.1.A1_x_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.28492.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.1198.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.19660.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26610Os.46055.2.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26610Os.10827.1.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26620Os.53235.1.S1_at11/113+15187636..15189300Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30274.1.A1_x_at--749--8311Chr10:2037973..2037997 (25 bp)
GGCTACACGCCACTGGAAATTTCTA
NONE
OsAffx.30274.1.A1_x_at--740--9551Chr10:2037858..2037882 (25 bp)
TCTTTTCTTCCATCTGGCGCGACTG
NONE
OsAffx.30274.1.A1_x_at--607--491Chr10:2037847..2037871 (25 bp)
ATCTGGCGCGACTGCAAAGAGGACA
NONE
OsAffx.30274.1.A1_x_at--627--4173Chr12:424890..425055 (25 bp)
GCGACTGCAAAGAGGACAACGGCAA
NONE
OsAffx.30274.1.A1_x_at--129--2212Chr03:15171589..15171612 (23 bp)
ACAACGGCAACGAAGGCGGCGGCTC
LOC_Os03g26590
OsAffx.30274.1.A1_x_at--92--5951Chr10:2037798..2037822 (25 bp)
GAGCACTCCCGTCGTAGATCGAGGA
NONE
OsAffx.30274.1.A1_x_at--489--3812Chr12:425020..425044 (25 bp)
CTCCTGCGCGGATGGCATCGAGGAC
LOC_Os12g01720
OsAffx.30274.1.A1_x_at--87--4711Chr10:2037725..2037749 (25 bp)
GCGGCGGCGACAGCTCCAGAGACAT
NONE
OsAffx.30274.1.A1_x_at--523--9731Chr10:2037684..2037708 (25 bp)
TCAAGGACGGTTTGGAGCGGCTCCC
NONE
OsAffx.30274.1.A1_x_at--356--1671Chr10:2037658..2037682 (25 bp)
AGCCCTCCAACGGTGGTCAATGGTG
NONE
OsAffx.30274.1.A1_x_at--120--3211Chr10:2037641..2037665 (25 bp)
CAATGGTGAGGCACGTCAGCTTCGC
NONE
Target Sequence 
GGCTACACGCCACTGGAAATTTCTAAAATTGGAATCATGCCACTCCTGTCCCTTCTTCCGTCTCCTCTCTCGCGCCGTCT
CCATTCCCATCCCACATGTCAGTTCCATCTCCCCATCTTTTCTTCCATCTGGCGCGACTGCAAAGAGGACAACGGCAACG
AAGGCGGCGGCTCCCGAGCACTCCCGTCGTAGATCGAGGACAGCGGCAGCGGCTCTCGAGCCCTCCTGCGCGGATGGCAT
CGAGGACGGCGGCGGCGACAGCTCCAGAGACATCCCGCCGCAGATGGCGTCAAGGACGGTTTGGAGCGGCTCCCGAGCCC
TCCAACGGTGGTCAATGGTGAGGCACGTCAGCTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30274.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis