Browse Element(s) Details


OsAffx.30375.1.S1_at

Description tigr:9638.m00912
TID=OsAffx.30375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1037011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10334OsAffx.30374.3.S1_s_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.1.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10350OsAffx.8417.1.S1_at11/1110+5449497..5455340retrotransposon protein, putative, unclassified
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30375.1.S1_at--1054--9631Chr10:5467687..5467711 (25 bp)
TCAGGTCTGACCATGAGGCTCCTGG
LOC_Os10g10370
OsAffx.30375.1.S1_at--1005--3511Chr10:5467676..5467700 (25 bp)
CATGAGGCTCCTGGTCAGATTGACC
LOC_Os10g10370
OsAffx.30375.1.S1_at--783--2091Chr10:5467651..5467675 (25 bp)
ACATGCTACCAGCTGGATCAGTCTT
LOC_Os10g10370
OsAffx.30375.1.S1_at--775--7951Chr10:5467637..5467661 (25 bp)
GGATCAGTCTTAAGCTACCAGTCGA
LOC_Os10g10370
OsAffx.30375.1.S1_at--266--9971Chr10:5467622..5467646 (25 bp)
TACCAGTCGACACTCAAGCACTTGG
LOC_Os10g10370
OsAffx.30375.1.S1_at--718--3231Chr10:5467608..5467632 (25 bp)
CAAGCACTTGGGAGTACTGAGTACC
LOC_Os10g10370
OsAffx.30375.1.S1_at--438--6051Chr10:5467597..5467621 (25 bp)
GAGTACTGAGTACCCCATTATGTGG
LOC_Os10g10370
OsAffx.30375.1.S1_at--101--1811Chr10:5467586..5467610 (25 bp)
ACCCCATTATGTGGGATCTTGTCCA
LOC_Os10g10370
OsAffx.30375.1.S1_at--379--6551Chr10:5467541..5467565 (25 bp)
GATTTTGAGAGATCCACTGGACGCC
LOC_Os10g10370
OsAffx.30375.1.S1_at--22--3911Chr10:5467525..5467549 (25 bp)
CTGGACGCCTGGTGAAAATGGAGAT
LOC_Os10g10370
OsAffx.30375.1.S1_at--333--8311Chr10:5467494..5467518 (25 bp)
GGCTACGGTTTTACCTGGTGCAGAT
LOC_Os10g10370
Target Sequence 
TCAGGTCTGACCATGAGGCTCCTGGTCAGATTGACCACATGCTACCAGCTGGATCAGTCTTAAGCTACCAGTCGACACTC
AAGCACTTGGGAGTACTGAGTACCCCATTATGTGGGATCTTGTCCATGGCTGCTTCACCCATGGTGGATTTTGAGAGATC
CACTGGACGCCTGGTGAAAATGGAGATGGTTTTGGCTACGGTTTTACCTGGTGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis