Browse Element(s) Details


OsAffx.30413.1.S1_at

Description tigr:9638.m01253
TID=OsAffx.30413.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ras family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1415011/11Ras-related protein Rab-2-B, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14060NANA10+7415451..7416643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14070OsAffx.20597.1.S1_at11/1110+7420622..7422124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14080OsAffx.305.1.S1_at11/1110+7422608..7423081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_x_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14100OsAffx.8347.1.S1_at11/1110+7425530..7426876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14120Os.26886.2.S1_s_at10/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.26886.6.S1_s_at8/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120OsAffx.16467.1.S1_at3/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_x_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14120Os.46334.1.S1_at1/1110+7429635..7432722transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130Os.26886.1.S1_x_at9/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14130OsAffx.16244.1.S1_x_at1/1110+7435556..7437385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14140Os.26886.3.S1_x_at3/1110+7438157..7438903transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14150OsAffx.30413.1.S1_at11/1110+7440420..7442393Ras-related protein Rab-2-B, putative
LOC_Os10g14160OsAffx.30414.1.S1_at11/1110+7446236..7446523hypothetical protein
LOC_Os10g14170Os.46707.1.A1_at11/1110+7450318..7451125hypothetical protein
LOC_Os10g14180Os.6177.1.S2_a_at11/1110+7457836..7461987expressed protein
LOC_Os10g14180Os.6177.3.S1_at10/1110+7457836..7461987expressed protein
LOC_Os10g14194Os.6177.2.S1_at10/1110+7461240..7467633expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0016049biological_processcell growth
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30413.1.S1_at--884--1051Chr10:7442133..7442157 (25 bp)
AGGTGGAAGATCTCACCACCGGCGT
LOC_Os10g14150
OsAffx.30413.1.S1_at--1078--5131Chr10:7442076..7442100 (25 bp)
GCAAAAACACTAAGCTCCAGATCTG
LOC_Os10g14150
OsAffx.30413.1.S1_at--1149--4911Chr10:7441043..7441067 (25 bp)
GCTTGCCTTTTGGTTTACGATATCA
LOC_Os10g14150
OsAffx.30413.1.S1_at--54--10451Chr10:7440932..7441053 (25 bp)
TTACGATATCACCAGGAGGGAGACT
LOC_Os10g14150
OsAffx.30413.1.S1_at--298--6331Chr10:7440877..7440901 (25 bp)
GATGCAACGCAGCATGCGAGTGCCC
LOC_Os10g14150
OsAffx.30413.1.S1_at--560--6111Chr10:7440860..7440884 (25 bp)
GAGTGCCCGCATGACAATAATTCTG
LOC_Os10g14150
OsAffx.30413.1.S1_at--390--611Chr10:7440824..7440848 (25 bp)
ATGCGACTTATCTCATAGACGTGTT
LOC_Os10g14150
OsAffx.30413.1.S1_at--459--1231Chr10:7440777..7440801 (25 bp)
AGTTCGCCAAGGAGCATGGTCTCCT
LOC_Os10g14150
OsAffx.30413.1.S1_at--1141--811Chr10:7440762..7440786 (25 bp)
ATGGTCTCCTCTTTATGGAGGCATC
LOC_Os10g14150
OsAffx.30413.1.S1_at--777--2931Chr10:7440618..7440641 (24 bp)
AAGGCATTCATCCTAGCTGCTAGAA
LOC_Os10g14150
OsAffx.30413.1.S1_at--681--3711Chr10:7440606..7440630 (25 bp)
CTAGCTGCTAGAACTGTACACAAGA
LOC_Os10g14150
Target Sequence 
AGGTGGAAGATCTCACCACCGGCGTCGAGTACGGCGCGTGCGTCGTCGCCGTCGACGGCAAAAACACTAAGCTCCAGATC
TGGGACACGGCTGGCCAAGAAGCATTCAGATGCATAACTAGATCATACTACAGAGGAAATGCTGCTTGCCTTTTGGTTTA
CGATATCACCAGGAGGGAGACTTTTTTTAATCATCTTGCAAGCTGGTTAGAAGATGCAACGCAGCATGCGAGTGCCCGCA
TGACAATAATTCTGATCGGAAACAAATGCGACTTATCTCATAGACGTGTTGTAAGCTATCAAGAAGGTGAACAGTTCGCC
AAGGAGCATGGTCTCCTCTTTATGGAGGCATCAGCAAAAACAGCTCACAATGTTGAGAAGGCATTCATCCTAGCTGCTAG
AACTGTACACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis