Browse Element(s) Details


OsAffx.30461.1.S1_at

Description tigr:9638.m01690
TID=OsAffx.30461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2046010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20430Os.46306.1.S1_x_at6/1110+9941426..9946497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20440OsAffx.20488.1.S1_at11/1110+9955022..9960740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20450Os.7350.1.S1_at11/1110+9961832..9964513MATE efflux family protein, expressed
LOC_Os10g20460OsAffx.30461.1.S1_at10/1110+9965696..9967221hypothetical protein
LOC_Os10g20470Os.5049.1.S1_at11/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20470OsAffx.30725.5.S1_x_at1/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30461.1.S1_at--327--9931Chr10:9967166..9967190 (25 bp)
TACGGGCTGCCAATGGACCCATCAA
LOC_Os10g20460
OsAffx.30461.1.S1_at--1102--351Chr10:9966388..9966610 (25 bp)
ATCAAAGCGAAGATTGCATGGGTTC
LOC_Os10g20460
OsAffx.30461.1.S1_at--787--4991Chr10:9966373..9966397 (25 bp)
GCATGGGTTCAGTTTCGTGGTCTTC
LOC_Os10g20460
OsAffx.30461.1.S1_at--771--1191Chr10:9966363..9966387 (25 bp)
AGTTTCGTGGTCTTCGTTACCTGCG
LOC_Os10g20460
OsAffx.30461.1.S1_at--441--8951Chr10:9966353..9966377 (25 bp)
TCTTCGTTACCTGCGGGATGGGTTA
LOC_Os10g20460
OsAffx.30461.1.S1_at--919--7991Chr10:9966280..9966362 (25 bp)
GGATGGGTTAAGAAAACAACACTCA
LOC_Os10g20460
OsAffx.30461.1.S1_at--136--2471NONE
AACAACACTCATATGTCTTCAATTA
NONE
OsAffx.30461.1.S1_at--3--771Chr10:9966254..9966278 (25 bp)
ATGTCTTCAATTATTACCGTGTATA
LOC_Os10g20460
OsAffx.30461.1.S1_at--531--10171Chr10:9966233..9966257 (25 bp)
TATATAAGAGGACGTCAGGCATGAC
LOC_Os10g20460
OsAffx.30461.1.S1_at--511--7111Chr10:9966220..9966244 (25 bp)
GTCAGGCATGACGATGGTCAAGGAA
LOC_Os10g20460
OsAffx.30461.1.S1_at--1002--3031Chr10:9965730..9965754 (25 bp)
AATCCTGTGGCATCCATGGAGGTGT
LOC_Os10g20460
Target Sequence 
TACGGGCTGCCAATGGACCCATCAAAGCGAAGATTGCATGGGTTCAGTTTCGTGGTCTTCGTTACCTGCGGGATGGGTTA
AGAAAACAACACTCATATGTCTTCAATTATTACCGTGTATATAAGAGGACGTCAGGCATGACGATGGTCAAGGAAACAGA
CAACAGGGAAATGTTTGCAAGAAGAGAATCCTGTGGCATCCATGGAGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis