Browse Element(s) Details


OsAffx.30515.2.S1_x_at

Description tigr:9640.m01613
TID=OsAffx.30515.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1649010/11hAT family dimerisation domain containing protein, expressed
LOC_Os10g290703/11hAT family dimerisation domain containing protein
LOC_Os02g294102/11hAT family dimerisation domain containing protein
LOC_Os03g197502/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16440NANA12+9411970..9413508retrotransposon protein, putative, unclassified
LOC_Os12g16450OsAffx.828.1.S1_x_at4/1112+9415583..9421009retrotransposon protein, putative, unclassified
LOC_Os12g16460NANA12+9421649..9423296retrotransposon protein, putative, unclassified
LOC_Os12g16470NANA12+9432404..9432751hypothetical protein
LOC_Os12g16480OsAffx.7611.1.S1_at10/1112+9433343..9435606hypothetical protein
LOC_Os12g16490OsAffx.30515.2.S1_x_at10/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16490OsAffx.30515.1.S1_x_at3/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16490OsAffx.30515.4.S1_x_at3/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16500Os.35344.18.S1_x_at10/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500Os.35344.3.S1_x_at9/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500OsAffx.22940.5.S1_x_at3/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16510OsAffx.7612.1.S1_at11/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.55820.1.S1_at9/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.32925.1.S1_at1/1112+9451263..9454464hypothetical protein
LOC_Os12g16520Os.54238.1.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16520OsAffx.18050.2.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30515.2.S1_x_at--334--5791NONE
GACGACGACGATGCTTTTCAACATG
NONE
OsAffx.30515.2.S1_x_at--944--3234Chr12:9440840..9440864 (25 bp)
CAAGCTTGGTGGTACTCCCCGAGTT
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--511--2111Chr12:9440970..9440994 (25 bp)
ACATGGAACCCAAATTTAGAGCTTA
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--457--4271Chr12:9441002..9441026 (25 bp)
CCTCGTCACCAATCATACTGAGCAT
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--1045--1951Chr12:9441018..9441042 (25 bp)
ACTGAGCATGATACGACGCTTGATG
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--1025--1871Chr12:9441046..9441070 (25 bp)
ACGATGTCGAACTCCTTGGGTGGTG
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--465--8791Chr12:9441097..9441121 (25 bp)
TGTTACCTCACTTTGCTCGAGATAT
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--941--9353Chr12:9441113..9441137 (25 bp)
TCGAGATATTCTTCTGGTTCCGGCC
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--1090--9552Chr12:9441147..9441171 (25 bp)
TCTTCCGAGCAAGCATTCAGCGTTA
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--1155--8971Chr12:9441260..9441284 (25 bp)
TGAACGAATACAACACTGTCTACAT
LOC_Os12g16490
OsAffx.30515.2.S1_x_at--364--5794Chr12:9441312..9441336 (25 bp)
GACGCATTGGCGGAAATTTGCCTTA
LOC_Os12g16490
Target Sequence 
GACGACGACGATGCTTTTCAACATGTCAATGATAAGCTCTATAGGGTTTTCTGTCTATACCAAACCAAGCTTGGTGGTAC
TCCCCGAGTTCCCAAGCAGACCTCACAAAAGAAAGCAAGCAAGTCAAGTGCAGTAAATTTGTGGAAGCAGTATATAGGCA
ACGACCAAGCCTCTTCATCCTCAGAGAACAAATCAACATGGAACCCAAATTTAGAGCTTAACCACTACCTCGTCACCAAT
CATACTGAGCATGATACGACGCTTGATGGCGACGATGTCGAACTCCTTGGGTGGTGGAAAGAGAAAGAGCGAACTCTTCC
TATGTTACCTCACTTTGCTCGAGATATTCTTCTGGTTCCGGCCTCCTCCGTCTCTTCCGAGCAAGCATTCAGCGTTACTA
GAAGAATTATTGAAGAACGAAGGTCATGCCTGACACCCAAGACGGTTGAGTCAATATTTTGTCTTAAAGACTGGATGGAA
GCAGATGAACGAATACAACACTGTCTACATGATCAAGAGCTTGCTGATGCAATGGAAGACGCATTGGCGGAAATTTGCCT
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30515.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis