Browse Element(s) Details


OsAffx.30596.1.S1_at

Description gb:NM_196653.1
DB_XREF= gi:37534665
TID=OsAffx.30596.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012D19.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2988011/11hypothetical protein
LOC_Os10g297201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29820OsAffx.20312.3.S1_x_at9/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.3.S1_at7/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.4.S1_x_at1/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29830OsAffx.20312.2.S1_x_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29830OsAffx.20312.2.S1_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.1.S1_x_at8/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.3.S1_x_at6/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29860Os.46868.2.S1_x_at11/1110+15188239..15189285hypothetical protein
LOC_Os10g29870NANA10+15191955..15192440expressed protein
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein
LOC_Os10g29900OsAffx.30598.1.S1_at11/1110+15202274..15202684hypothetical protein
LOC_Os10g29920OsAffx.30599.2.S1_x_at11/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.4.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920Os.53704.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29930NANA10+15211347..15213308hypothetical protein
LOC_Os10g29940NANA10+15215528..15215812hypothetical protein
LOC_Os10g29950OsAffx.20312.1.S1_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.1.S1_x_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.4.S1_x_at5/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.2.S1_x_at2/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29960OsAffx.30600.1.S1_at9/1110+15219463..15221542hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30596.1.S1_at--553--1631Chr10:15195377..15195401 (25 bp)
AGCGGGAGCGGGACGCCACATCCTC
LOC_Os10g29880
OsAffx.30596.1.S1_at--630--5811Chr10:15195366..15195390 (25 bp)
GACGCCACATCCTCTCGGATGAGGA
LOC_Os10g29880
OsAffx.30596.1.S1_at--566--6351Chr10:15195343..15195367 (25 bp)
GATGCCGTCAACTTTGTCTTCGAGG
LOC_Os10g29880
OsAffx.30596.1.S1_at--135--6451Chr10:15195294..15195318 (25 bp)
GATCAGCCGTCCTCGGGATGGAGCT
LOC_Os10g29880
OsAffx.30596.1.S1_at--81--1551Chr10:15195148..15195172 (25 bp)
AGCTTTTTCCCTCAGCAAGACAGGC
LOC_Os10g29880
OsAffx.30596.1.S1_at--362--911Chr10:15195127..15195151 (25 bp)
AGGCGTCGCGGCTGGATACATTCAT
LOC_Os10g29880
OsAffx.30596.1.S1_at--572--8571Chr10:15195115..15195139 (25 bp)
TGGATACATTCATCATCTTCGGTGA
LOC_Os10g29880
OsAffx.30596.1.S1_at--886--411Chr10:15195101..15195125 (25 bp)
ATCTTCGGTGAAGTTGTCCGGCGGA
LOC_Os10g29880
OsAffx.30596.1.S1_at--678--731Chr10:15195048..15195072 (25 bp)
ATGTTCCTGCCCTGGAGGCGAGTCA
LOC_Os10g29880
OsAffx.30596.1.S1_at--80--9631Chr10:15195026..15195050 (25 bp)
TCAGGCGACGCCACCGTCAGCGATG
LOC_Os10g29880
OsAffx.30596.1.S1_at--876--9652Chr10:15121947..15121970 (24 bp)
TCAGCGATGGCCACGGAGGTACTCC
LOC_Os10g29720
Target Sequence 
AGCGGGAGCGGGACGCCACATCCTCTCGGATGAGGATGCCGTCAACTTTGTCTTCGAGGTCCCCTGCCCCCCCGCGCCCA
CCAGATCAGCCGTCCTCGGGATGGAGCTGCTCGCCGAGGGATCGGGACTTGGAGGCGGCGGAGGCGGCAGCGGCAGCGGC
GGCGGCGGCGGCGGCGTTGGGGGCGTTGGGGGCGGCTCCGCCGACGACGAGCACCGGCACCGCCTCCCCAGCTTTTTCCC
TCAGCAAGACAGGCGTCGCGGCTGGATACATTCATCATCTTCGGTGAAGTTGTCCGGCGGAGTCATGGGGTGCTCTCTGC
AGCACGCCCATGTTCCTGCCCTGGAGGCGAGTCAGGCGACGCCACCGTCAGCGATGGCCACGGAGGTACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis