Browse Element(s) Details


OsAffx.30812.1.S1_x_at

Description tigr:9640.m00328
TID=OsAffx.30812.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to C3HC4-type RING zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0413011/11Kelch motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04060OsAffx.30810.1.S1_s_at11/1112+1707508..1710344transcription initiation factor IIE, putative, expressed
LOC_Os12g04070OsAffx.31571.1.S1_at11/1112+1711516..1711776hypothetical protein
LOC_Os12g04080Os.56203.1.S1_at11/1112+1712134..1713663Transferase family protein, expressed
LOC_Os12g04090OsAffx.30811.1.S1_at10/1112+1714125..1714743Zinc finger, C3HC4 type family protein
LOC_Os12g04100Os.54318.1.S1_at2/1112+1715190..1716740Cytochrome P450 family protein
LOC_Os12g04110Os.6654.1.S1_at11/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04110OsAffx.24379.1.S1_at1/1112+1718705..1725257Cytochrome P450 family protein
LOC_Os12g04120OsAffx.31572.1.S1_at8/1112+1726835..1729563phosphoglycerate mutase family protein
LOC_Os12g04130OsAffx.30812.1.S1_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.1.S1_x_at11/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130Os.56229.1.S1_at5/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04130OsAffx.30812.2.S1_x_at1/1112+1731267..1733980Kelch motif family protein
LOC_Os12g04140Os.50916.1.S1_at1/1112+1738759..1739846cell death associated protein, putative, expressed
LOC_Os12g04150Os.5943.1.S1_at11/1112+1744258..1745535cell death associated protein, putative, expressed
LOC_Os12g04160OsAffx.19483.1.S1_s_at11/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160OsAffx.19483.1.S1_at7/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04160Os.23431.1.A1_at3/1112+1746276..1749056ribosomal protein L24 containing protein, expressed
LOC_Os12g04170Os.55139.1.S1_at3/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04170OsAffx.19217.1.S1_x_at2/1112+1750751..1752163phosphate translocator, putative, expressed
LOC_Os12g04180Os.12347.3.S1_at11/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04180Os.12347.4.S1_x_at9/1112+1754561..1758696RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30812.1.S1_x_at--737--3551Chr12:1733380..1733404 (25 bp)
CATCTCTTCCATTTTATTTGCTCAC
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--903--3631Chr12:1733385..1733409 (25 bp)
CTTCCATTTTATTTGCTCACACTGA
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--384--211Chr12:1733395..1733419 (25 bp)
ATTTGCTCACACTGAAATGCACGCG
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--13--9711Chr12:1733401..1733425 (25 bp)
TCACACTGAAATGCACGCGCGACTG
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--218--2291Chr12:1733409..1733433 (25 bp)
AAATGCACGCGCGACTGCTGCTACG
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--1119--5071Chr12:1733413..1733437 (25 bp)
GCACGCGCGACTGCTGCTACGAATG
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--624--9111Chr12:1733424..1733448 (25 bp)
TGCTGCTACGAATGCACGCGCCCAT
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--269--7472Chr12:1733519..1733543 (25 bp)
GTGTGCCTCGGCTACGGCATCGCCA
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--227--4212Chr12:1733673..1733697 (25 bp)
CCGCCGTCGTGGTGCTAGGCCTCGA
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--112--2831Chr12:1733726..1733750 (25 bp)
AAGTTCCTACACGTCGGCGTCGGTG
LOC_Os12g04130
OsAffx.30812.1.S1_x_at--790--7371Chr12:1733748..1733772 (25 bp)
GTGACGACGACAACGCGTGCGCGGG
LOC_Os12g04130
Target Sequence 
CATCTCTTCCATTTTATTTGCTCACACTGAAATGCACGCGCGACTGCTGCTACGAATGCACGCGCCCATCTCCTTCGCGC
CCGCATCTTCGCCCGACGCCGCCTCCTTCGCGCCCGCCGCAGCGGACGTCGGCGGCGCCGTGTGCCTCGGCTACGGCATC
GCCATCGCCGTCGGCGTCCTCGTCTTCATCTCCACCGTCATGCTCGCCTCCTACATCTGCGTCCGCGCCAAGGCCGGCGC
AGCTGCCGTGCTCCTCGCCGACGACGACGACGACGGCGGCGCCCCGGCAGCGTCCGCCGTCGTGGTGCTAGGCCTCGACG
GCCCTGCCATCGACGCGCTCTACCCCAAGTTCCTACACGTCGGCGTCGGTGACGACGACAACGCGTGCGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30812.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis