Browse Element(s) Details


OsAffx.30966.5.S1_at

Description tigr:9635.m03554
TID=OsAffx.30966.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3596011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35900OsAffx.13097.1.S1_s_at11/117+21483129..21487020transposon protein, putative, unclassified
LOC_Os07g35910NANA7+21487545..21490730transposon protein, putative, unclassified
LOC_Os07g35920NANA7+21491369..21497524transposon protein, putative, unclassified
LOC_Os07g35930NANA7+21498291..21501852hypothetical protein
LOC_Os07g35940OsAffx.28771.1.S1_at10/117+21502121..21504662Beta-amylase, putative
LOC_Os07g35950OsAffx.16576.1.S1_at11/117+21508255..21509157hypothetical protein
LOC_Os07g35960OsAffx.30966.5.S1_at11/117+21511368..21515317expressed protein
LOC_Os07g35960OsAffx.30966.4.S1_x_at2/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_x_at1/117+21511368..21515317expressed protein
LOC_Os07g35960Os.51465.1.S1_at1/117+21511368..21515317expressed protein
LOC_Os07g35970OsAffx.28773.1.S1_at9/117+21517207..21518259Strictosidine synthase family protein
LOC_Os07g35980Os.12698.1.S1_at11/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_x_at2/117+21518941..21521454expressed protein
LOC_Os07g35980Os.42235.1.S1_at1/117+21518941..21521454expressed protein
LOC_Os07g35990OsAffx.28773.1.S1_at10/117+21529682..21530434Strictosidine synthase family protein
LOC_Os07g36000Os.27639.1.S1_x_at10/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36000OsAffx.8980.1.S1_at9/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36010Os.10827.1.S1_x_at10/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010Os.46055.2.S1_x_at7/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_x_at1/117+21539647..21549225transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30966.5.S1_at--916--1171Chr07:21514566..21514590 (25 bp)
AGTACATATATGTGGCGCCAAGCCT
LOC_Os07g35960
OsAffx.30966.5.S1_at--859--4551Chr07:21514580..21514604 (25 bp)
GCGCCAAGCCTGTTACGTAGTATGT
LOC_Os07g35960
OsAffx.30966.5.S1_at--951--6931Chr07:21514596..21514620 (25 bp)
GTAGTATGTGCCAGCATGCCCAAGC
LOC_Os07g35960
OsAffx.30966.5.S1_at--120--4991Chr07:21514609..21514633 (25 bp)
GCATGCCCAAGCTAAGCTCACAGAA
LOC_Os07g35960
OsAffx.30966.5.S1_at--949--2331Chr07:21514643..21514667 (25 bp)
AAAGAACTATCTCACACCTTACGAG
LOC_Os07g35960
OsAffx.30966.5.S1_at--892--3111Chr07:21514965..21514989 (25 bp)
AATTTGCCCAAGAGCTAGATCACGG
LOC_Os07g35960
OsAffx.30966.5.S1_at--395--10051Chr07:21514980..21515004 (25 bp)
TAGATCACGGACATATTAGGCAAAG
LOC_Os07g35960
OsAffx.30966.5.S1_at--715--3491Chr07:21515162..21515186 (25 bp)
CTGTCAATTGTAGAAGAAACGCCCT
LOC_Os07g35960
OsAffx.30966.5.S1_at--393--5551Chr07:21515177..21515201 (25 bp)
GAAACGCCCTCAAAGGTTGAGAACT
LOC_Os07g35960
OsAffx.30966.5.S1_at--1160--9571Chr07:21515211..21515235 (25 bp)
TCTTGGGTGATGTAGGCTTTATGGA
LOC_Os07g35960
OsAffx.30966.5.S1_at--944--4871Chr07:21515226..21515250 (25 bp)
GCTTTATGGAATGCGGCACACCTCT
LOC_Os07g35960
Target Sequence 
AGTACATATATGTGGCGCCAAGCCTGTTACGTAGTATGTGCCAGCATGCCCAAGCTAAGCTCACAGAATTAGACCTAAAA
GAACTATCTCACACCTTACGAGAGGTGTTGGAAAGAATAATGAATGCTGAAGGGGCAGAACTAGAGATTCTCATTGGCCT
TAGTTCACAGATATGCAAAGTCAATCCTGAAGAATTTGCCCAAGAGCTAGATCACGGACATATTAGGCAAAGATTTGTGA
AGAGGCTAGTGGATGCACTGAATGCAAACATGAAACCAAGTGCTCACTGCCCTGGGATCCGGAGGGTGATACTTGAGCAA
TCCATATACATGATGGAGTGCAATTCTCACTATGCCAATTGTTTCAATGAATTCCGGATGATGGACGCACTGTCAATTGT
AGAAGAAACGCCCTCAAAGGTTGAGAACTACATGGTTTTCTTGGGTGATGTAGGCTTTATGGAATGCGGCACACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30966.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis