Browse Element(s) Details


OsAffx.31096.1.S1_at

Description tigr:9639.m02058
TID=OsAffx.31096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2303011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22980Os.26886.3.S1_x_at4/1111+12737424..12739275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g22989NANA11+12745311..12746255NA
LOC_Os11g23000OsAffx.7693.1.S1_x_at1/1111+12747544..12747978hypothetical protein
LOC_Os11g23010Os.26886.1.S1_x_at9/1111+12751064..12754469transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23010Os.26886.3.S1_x_at5/1111+12751064..12754469transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23010OsAffx.16244.1.S1_x_at1/1111+12751064..12754469transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23020Os.26886.2.S1_s_at8/1111+12757116..12760194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23020Os.26886.6.S1_s_at8/1111+12757116..12760194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23020OsAffx.16467.1.S1_at6/1111+12757116..12760194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23020OsAffx.3425.1.S1_at1/1111+12757116..12760194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23030OsAffx.31096.1.S1_x_at11/1111+12761369..12762053hypothetical protein
LOC_Os11g23030OsAffx.31096.1.S1_at11/1111+12761369..12762053hypothetical protein
LOC_Os11g23040OsAffx.29376.1.S1_x_at1/1111+12768053..12772899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23040OsAffx.18193.1.S1_at1/1111+12768053..12772899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23050OsAffx.7175.1.S1_at11/1111+12774013..12776619hypothetical protein
LOC_Os11g23060OsAffx.25819.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.13875.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.2.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.3.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25367.1.S1_at1/1111+12781345..12790668retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31096.1.S1_at--628--10531Chr11:12761998..12762022 (25 bp)
TTGAGGAAACACAGGGCTACCGGAT
LOC_Os11g23030
OsAffx.31096.1.S1_at--16--8891Chr11:12761997..12762021 (25 bp)
TGAGGAAACACAGGGCTACCGGATC
LOC_Os11g23030
OsAffx.31096.1.S1_at--2--4411Chr11:12761951..12761975 (25 bp)
GCCAAAGATGGCTATGGGCGTTGTC
LOC_Os11g23030
OsAffx.31096.1.S1_at--732--2331Chr11:12761948..12761972 (25 bp)
AAAGATGGCTATGGGCGTTGTCGCT
LOC_Os11g23030
OsAffx.31096.1.S1_at--1074--851Chr11:12761944..12761968 (25 bp)
ATGGCTATGGGCGTTGTCGCTCCCC
LOC_Os11g23030
OsAffx.31096.1.S1_at--851--10111Chr11:12761939..12761963 (25 bp)
TATGGGCGTTGTCGCTCCCCTGGTC
LOC_Os11g23030
OsAffx.31096.1.S1_at--901--4791Chr11:12761926..12761950 (25 bp)
GCTCCCCTGGTCTAGCCATGGGCGA
LOC_Os11g23030
OsAffx.31096.1.S1_at--439--8591Chr11:12761823..12761847 (25 bp)
TGGTCTAGCCATGGGCGACGGGCGC
LOC_Os11g23030
OsAffx.31096.1.S1_at--406--5731Chr11:12761455..12761831 (25 bp)
GACGGGCGCCGTATCGCCTTACATT
LOC_Os11g23030
OsAffx.31096.1.S1_at--493--6911Chr11:12761445..12761469 (25 bp)
GTATCGCCTTACATTTGCTCATTGA
LOC_Os11g23030
OsAffx.31096.1.S1_at--645--10151Chr11:12761444..12761468 (25 bp)
TATCGCCTTACATTTGCTCATTGAT
LOC_Os11g23030
Target Sequence 
TTGAGGAAACACAGGGCTACCGGATCGGAAGGATGGCGACGAGAGAAGCCAAAGATGGCTATGGGCGTTGTCGCTCCCCT
GGTCTAGCCATGGGCGACGGGCGCCGTATCGCCTTACATTTGCTCATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis