Browse Element(s) Details


OsAffx.31111.1.S1_x_at

Description tigr:9639.m02178
TID=OsAffx.31111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2462011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24560Os.6807.1.S1_at10/1111+13514550..13522201Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os11g24570Os.15985.1.S1_at11/1111+13527406..13529637pentatricopeptide, putative, expressed
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified
LOC_Os11g24600OsAffx.18993.1.S1_at11/1111+13538090..13538740hypothetical protein
LOC_Os11g24590Os.54333.1.S1_at10/1111+13538645..13542240transposon protein, putative, Pong sub-class, expressed
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31111.1.S1_x_at--1008--1932Chr04:6644762..6644782 (21 bp)
ACGGCGGCATCCCAGCACACGAGTT
NONE
OsAffx.31111.1.S1_x_at--971--9551Chr11:13546941..13546965 (25 bp)
TCTTTTCTTTTCCTCTATCTCCCGA
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--544--431Chr11:13546871..13546895 (25 bp)
ATCTTCTTTCGCCCCGGCGAGGAAG
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--377--3751Chr11:13546796..13546820 (25 bp)
CTGCAAGTCCTTGACCTGCACGACG
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--428--9151Chr11:13546712..13546736 (25 bp)
TGCCGTACCCGGTGACATCGAGCAC
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--1000--9951Chr11:13546707..13546731 (25 bp)
TACCCGGTGACATCGAGCACGTGGA
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--384--3931Chr11:13546557..13546581 (25 bp)
CGGCGCGCCACTGGGTGGGAGACGA
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--1154--8631Chr11:13546542..13546566 (25 bp)
TGGGAGACGACACCAGCGACCACAT
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--935--9131Chr11:13546497..13546521 (25 bp)
TGCGGGTCGCGGTGCAGGAACACGT
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--814--8651Chr11:13546458..13546482 (25 bp)
TGGGCGGAGCGGACAAACGCGTCGT
LOC_Os11g24620
OsAffx.31111.1.S1_x_at--208--3991Chr11:13546439..13546463 (25 bp)
CGTCGTGGAGGGAGAAGTCGTCGTT
LOC_Os11g24620
Target Sequence 
ACGGCGGCATCCCAGCACACGAGTTCCTCTCTTTCTCTTCTTTTCTTTTCCTCTATCTCCCGACGCACGCCGACGTGGTG
CACTGCCCGGGCGGGCGCGGGCGCAGCCATCTTCTTTCGCCCCGGCGAGGAAGACGGACTCGAGGTGCACGGTGGCGAGC
GCCGGCGCGGAGTCGACGACGCCCTGCAAGTCCTTGACCTGCACGACGCACAGCCGCAGCCGCAGCGTCGTCAGCCGCGG
GAGCGCCGCCGGCGGAGAGGGAGAAGCTGCCGTACCCGGTGACATCGAGCACGTGGAGCGTCTCCGACGGCTGTGTGTTG
CTGCGGAGGGAGAGGTGGAATTCCCCTTCCATCTCCGCGACCTCCTTGTCGGACGACGGCTCGTCGGCGGACTTGACGGC
GGCGACACGGAGCTCCTCGACGCGGCGCGCCACTGGGTGGGAGACGACACCAGCGACCACATCGTGCTTCCTCTCCCAAT
CCTGCGGGTCGCGGTGCAGGAACACGTCGGCGAGCGCGGCGTGGGCGGAGCGGACAAACGCGTCGTGGAGGGAGAAGTCG
TCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31111.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis