Browse Element(s) Details


OsAffx.31178.1.S1_at

Description tigr:9639.m02542
TID=OsAffx.31178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2820011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28150OsAffx.32056.1.S1_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_x_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.30536.1.S1_x_at1/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28160OsAffx.31177.1.S1_at10/1111+15686749..15689228hypothetical protein
LOC_Os11g28160OsAffx.17842.1.S1_at1/1111+15686749..15689228hypothetical protein
LOC_Os11g28170OsAffx.19048.1.S1_at10/1111+15697431..15699022hypothetical protein
LOC_Os11g28200OsAffx.31178.1.S1_at11/1111+15704006..15714676expressed protein
LOC_Os11g28200Os.52413.1.S1_at10/1111+15704006..15714676expressed protein
LOC_Os11g28200OsAffx.22745.1.S1_x_at1/1111+15704006..15714676expressed protein
LOC_Os11g28184Os.52242.1.S1_at11/1111+15704150..15712338expressed protein
LOC_Os11g28184OsAffx.10156.1.S1_x_at2/1111+15704150..15712338expressed protein
LOC_Os11g28184Os.52782.1.S1_at1/1111+15704150..15712338expressed protein
LOC_Os11g28184OsAffx.10528.1.S1_x_at1/1111+15704150..15712338expressed protein
LOC_Os11g28210NANA11+15715875..15719213retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28220OsAffx.5018.1.S1_at1/1111+15725381..15726101hypothetical protein
LOC_Os11g28230OsAffx.26069.1.S1_x_at2/1111+15729120..15732712Transposable element protein, putative, Transposase_28
LOC_Os11g28240Os.1709.1.S1_x_at5/1111+15733989..15737594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28250NANA11+15738084..15739904retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31178.1.S1_at--651--1051Chr11:15713765..15713789 (25 bp)
AGGTGTGCCGTCTTGCGGTTCTTAT
LOC_Os11g28200
OsAffx.31178.1.S1_at--101--7471Chr11:15713763..15713787 (25 bp)
GTGTGCCGTCTTGCGGTTCTTATTC
LOC_Os11g28200
OsAffx.31178.1.S1_at--982--2971Chr11:15713712..15713736 (25 bp)
AATGTGGCAGCGGTATCGGAGCTTT
LOC_Os11g28200
OsAffx.31178.1.S1_at--848--3372Chr11:14966875..14966899 (25 bp)
CAGCGGTATCGGAGCTTTGCAAGGT
NONE
OsAffx.31178.1.S1_at--852--1691Chr11:15713659..15713683 (25 bp)
AAGCGGTTCGGGTGTGGCAAAGGCA
LOC_Os11g28200
OsAffx.31178.1.S1_at--101--8511Chr11:15713645..15713669 (25 bp)
TGGCAAAGGCATTAGAGGTATGCAA
LOC_Os11g28200
OsAffx.31178.1.S1_at--704--9471Chr11:15713578..15713602 (25 bp)
TCTGATGCAGGTAGGGACAACAGCG
LOC_Os11g28200
OsAffx.31178.1.S1_at--1137--2191Chr11:15713562..15713586 (25 bp)
ACAACAGCGGAGAAGGTGGCTTACC
LOC_Os11g28200
OsAffx.31178.1.S1_at--58--3391Chr11:15713558..15713582 (25 bp)
CAGCGGAGAAGGTGGCTTACCGACC
LOC_Os11g28200
OsAffx.31178.1.S1_at--267--8471Chr11:15713546..15713570 (25 bp)
TGGCTTACCGACCACCTTTTCTAAT
LOC_Os11g28200
OsAffx.31178.1.S1_at--636--4311Chr11:15713532..15713556 (25 bp)
CCTTTTCTAATTCCGGCGCCAAGAG
LOC_Os11g28200
Target Sequence 
AGGTGTGCCGTCTTGCGGTTCTTATTCAAGAGGCTACGGCAGGAGGCGGCTCGAATGTGGCAGCGGTATCGGAGCTTTGC
AAGGTGGTGGCGACGGCGGGGGATGGAAGCGGTTCGGGTGTGGCAAAGGCATTAGAGGTATGCAAGGCGGTGGATGTGAT
GCACAAGGAGGTGGCGGCGCCCGCGGATCTGATGCAGGTAGGGACAACAGCGGAGAAGGTGGCTTACCGACCACCTTTTC
TAATTCCGGCGCCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis