Browse Element(s) Details


OsAffx.31535.2.S1_x_at

Description tigr:9640.m00023
TID=OsAffx.31535.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0123011/11expressed protein
LOC_Os11g012408/11IBR domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01190Os.15622.1.S1_at11/1112+104922..111632RNA recognition motif family protein, expressed
LOC_Os12g01200Os.11572.1.S1_at11/1112+111744..119224leucine-rich repeat family protein, putative, expressed
LOC_Os12g01210Os.47934.1.S1_x_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01210Os.47934.1.S1_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01220Os.6077.1.S1_at11/1112+127352..132372expressed protein
LOC_Os12g01230OsAffx.31535.2.S1_x_at11/1112+132654..134949expressed protein
LOC_Os12g01230OsAffx.31535.1.S1_at9/1112+132654..134949expressed protein
LOC_Os12g01240Os.6196.1.S1_x_at11/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01240Os.6196.2.S1_at9/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01250OsAffx.31536.1.S1_at10/1112+147185..152390hypothetical protein
LOC_Os12g01250Os.33915.1.S1_at1/1112+147185..152390hypothetical protein
LOC_Os12g01260Os.12962.1.S1_at11/1112+155438..156023Sec61beta family protein, expressed
LOC_Os12g01270Os.20602.2.S1_x_at10/1112+156852..159032hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31535.2.S1_x_at--334--9792Chr12:134034..134058 (25 bp)
TAAGCTACTTCATGGGATGCTCCCA
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--463--2332Chr12:134107..134131 (25 bp)
AAAGATGTTCCTATCTCCACGGTTA
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--585--10211Chr12:134189..134213 (25 bp)
TATTGCCCATATCCCAAGTGTTCAG
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--339--2871Chr12:134204..134228 (25 bp)
AAGTGTTCAGCCTTGATGTCCATGA
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--489--4172Chr12:134388..134412 (25 bp)
CCCATGCTCGTCTAGAAGATGCCTA
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--434--10151Chr12:134411..134435 (25 bp)
TATCTACAGAACCTTGCACGGCAGC
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--892--10112Chr12:134680..134704 (25 bp)
TATGAGTTCTGCTACACCTGTGGAA
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--658--1452Chr12:134717..134741 (25 bp)
AGAAGAAAGCGACCTGCTCTTGTCC
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--318--10412Chr12:134762..134786 (25 bp)
TTATCCGTGATGATCCTCAAGGCAA
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--129--632Chr12:134786..134810 (25 bp)
ATGCTGCTATCCATGATGATCCTGA
LOC_Os12g01230
OsAffx.31535.2.S1_x_at--741--5292Chr12:134863..134887 (25 bp)
GAAGGCCTTCAGTACAATGTGGATT
LOC_Os12g01230
Target Sequence 
TAAGCTACTTCATGGGATGCTCCCAGCTTGCCCACAAGATGGTTGCACTACCAAGCTAAACTGTGGAGGGTTCAAAGATG
TTCCTATCTCCACGGTTATTAGCGATCATGGTGCAGCGTATCAGGGAAGCACAAATTCCTCCAACTCACAAGATTTATTG
CCCATATCCCAAGTGTTCAGCCTTGATGTCCATGAGAGAACTGATACATCCAATGCAAGCATCATCCTCAAAATGACTTG
TTATGACTACAAGAGGAGGTACCCCCATGCTCGTCTAGAAGATGCCTATCTACAGAACCTTGCACGGCAGCGGTGCGGCT
ATGAGTTCTGCTACACCTGTGGAAAAGAATGGAAGGAGAAGAAAGCGACCTGCTCTTGTCCACTGTGGGATGAACGCAAC
ATTATCCGTGATGATCCTCAAGGCAATGCTGCTATCCATGATGATCCTGAAGATGAATATGATGACTACTATGATGAGGA
CGAAAATAATTACTATGTTGGAGAAGGCCTTCAGTACAATGTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31535.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis