Browse Element(s) Details


OsAffx.31541.1.S1_s_at

Description tigr:9639.m00062
TID=OsAffx.31541.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PRA1 family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0161011/11PRA1 family protein, expressed
LOC_Os12g016901/11PRA1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31541.1.S1_s_at--235--9372Chr12:414539..414563 (25 bp)
TCGACGAGCCAGACCAGGCCAACGG
LOC_Os12g01690
OsAffx.31541.1.S1_s_at--73--4992Chr12:414641..414660 (20 bp)
GCATGCATTCCAAGCAAAGGTCATA
NONE
OsAffx.31541.1.S1_s_at--424--5611Chr11:356418..356442 (25 bp)
GACAAACACTATCATTTATTCGTAT
LOC_Os11g01610
OsAffx.31541.1.S1_s_at--963--3571Chr11:356430..356454 (25 bp)
CATTTATTCGTATGGTGATCGATGT
LOC_Os11g01610
OsAffx.31541.1.S1_s_at--1118--7632Chr12:414741..414969 (25 bp)
GGGAGAATGATACTGCTATAAGATG
NONE
OsAffx.31541.1.S1_s_at--1075--6531Chr11:356505..356529 (25 bp)
GATTTTGTCGATGATCTAGTTTTGT
LOC_Os11g01610
OsAffx.31541.1.S1_s_at--840--6292Chr12:414782..414806 (25 bp)
GATGATCTAGTTTTGTTTCCTTTTG
NONE
OsAffx.31541.1.S1_s_at--911--10671Chr11:356530..356554 (25 bp)
TTCCTTTTGCATTTGATGTATGAGA
LOC_Os11g01610
OsAffx.31541.1.S1_s_at--439--8831Chr11:356592..356616 (25 bp)
TGATATTGATGTGATCCGTCTCATC
LOC_Os11g01610
OsAffx.31541.1.S1_s_at--936--6251Chr11:356599..356623 (25 bp)
GATGTGATCCGTCTCATCAATCGTG
LOC_Os11g01610
OsAffx.31541.1.S1_s_at--942--551Chr11:356605..356629 (25 bp)
ATCCGTCTCATCAATCGTGCCGGTT
LOC_Os11g01610
Target Sequence 
TCGACGAGCCAGACCAGGCCAACGGCGCCGCCTCCGTCAACCTGCTCTCCTTCATCACCAGCGCCACCGGAGGCCGCGTC
TGATCCTCCTCCTCGCGCATGCATTCCAAGCAAAGGTCATAAATTCTTTTTATATTATACCTATGAGACAAACACTATCA
TTTATTCGTATGGTGATCGATGTAGAACAAAAAAAAATTAGGGGAGAATGATACTGCTATAAGATGCATATATGATTTTG
TCGATGATCTAGTTTTGTTTCCTTTTGCATTTGATGTATGAGAAACTTGAGAGCAAAAAGAAGAATTCTGTTATTGATCC
TGATATTGATGTGATCCGTCTCATCAATCGTGCCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31541.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis