Browse Element(s) Details


OsAffx.31568.1.S1_at

Description tigr:9640.m00295
TID=OsAffx.31568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable serinethreonine kinase (EC 2.7.1.-) SNFL1 - sorghum
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0381011/11CIPK-like protein 1, putative, expressed
LOC_Os11g039705/11CIPK-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03760Os.15833.1.S1_at4/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.30486.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760Os.49373.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.9762.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03780OsAffx.19474.1.S1_at8/1112+1539860..1540159hypothetical protein
LOC_Os12g03790OsAffx.7477.1.S1_at11/1112+1540850..1545542LG27/30-like gene, putative, expressed
LOC_Os12g03800NANA12+1549317..1550245expressed protein
LOC_Os12g03810Os.10274.4.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810OsAffx.31568.1.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810Os.10274.1.S1_a_at10/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03816Os.10274.3.S1_at11/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03816OsAffx.31569.1.S1_x_at8/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03822Os.49735.1.S1_x_at11/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03822OsAffx.31569.1.S1_x_at2/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03830Os.18707.1.S1_at1/1112+1567001..1571324major facilitator superfamily antiporter, putative
LOC_Os12g03840NANA12+1572521..1573733retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03850NANA12+1574190..1576956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0009628biological_processresponse to abiotic stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31568.1.S1_at--564--10531Chr12:1557930..1557954 (25 bp)
TTCAGAGCAGGTACGTGATCTCCCT
LOC_Os12g03810
OsAffx.31568.1.S1_at--71--7851Chr12:1557939..1557963 (25 bp)
GGTACGTGATCTCCCTATTTAATCA
LOC_Os12g03810
OsAffx.31568.1.S1_at--806--10751Chr12:1557967..1557991 (25 bp)
TTGACCAACAACCTTTTGAACCTAT
LOC_Os12g03810
OsAffx.31568.1.S1_at--116--8992Chr12:1557983..1558007 (25 bp)
TGAACCTATTCTCCCTGTATTATTT
LOC_Os12g03810
OsAffx.31568.1.S1_at--409--8552Chr12:1558050..1558074 (25 bp)
TGGTTCAACTTATACCTCCCTAAAT
LOC_Os12g03810
OsAffx.31568.1.S1_at--1011--3651Chr12:1558058..1558082 (25 bp)
CTTATACCTCCCTAAATCAAGCTGG
LOC_Os12g03810
OsAffx.31568.1.S1_at--608--752Chr12:1558087..1558111 (25 bp)
ATGTAAACTGGCTCACTGGCACTTT
LOC_Os12g03810
OsAffx.31568.1.S1_at--371--8252Chr12:1558104..1558128 (25 bp)
GGCACTTTGTCAATTTACTCAATCA
LOC_Os12g03810
OsAffx.31568.1.S1_at--345--5272Chr12:1558139..1558163 (25 bp)
GAATGCTGCATGTCACAAGTCCCAG
LOC_Os12g03810
OsAffx.31568.1.S1_at--218--5291Chr12:1558189..1558213 (25 bp)
GAATGTCTTTTGATTTTTGCACCTC
LOC_Os12g03810
OsAffx.31568.1.S1_at--891--10731Chr12:1558205..1558229 (25 bp)
TTGCACCTCATAATTCTGCCATAAC
LOC_Os12g03810
Target Sequence 
TTCAGAGCAGGTACGTGATCTCCCTATTTAATCAATATTGACCAACAACCTTTTGAACCTATTCTCCCTGTATTATTTTT
ATGAACGAACCTGTAACTTAAAGTTAAGCGTCATTGTTTTTGGTTCAACTTATACCTCCCTAAATCAAGCTGGAAACATG
TAAACTGGCTCACTGGCACTTTGTCAATTTACTCAATCATATGGTTGGAGAATGCTGCATGTCACAAGTCCCAGAATATA
TGTAGTAGTTCATTGGTCAGAATGTCTTTTGATTTTTGCACCTCATAATTCTGCCATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis