Browse Element(s) Details


OsAffx.31659.1.S1_s_at

Description tigr:9631.m01552
TID=OsAffx.31659.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1598011/11hypothetical protein
LOC_Os12g0934011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16020Os.22731.1.S1_at11/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.57467.1.S1_x_at6/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.37773.1.S1_x_at4/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_x_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.57467.1.S1_x_at5/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31659.1.S1_s_at--132--633Chr04:27148264..27148288 (25 bp)
ATGCTCGTACGCTCCGTGTGCATGC
NONE
OsAffx.31659.1.S1_s_at--11--7474Chr04:27148279..27148303 (25 bp)
GTGTGCATGCCCTTCGCATGCGGCT
NONE
OsAffx.31659.1.S1_s_at--678--9353Chr04:27148292..27148316 (25 bp)
TCGCATGCGGCTGCGAGCGCAAGCA
NONE
OsAffx.31659.1.S1_s_at--140--2733Chr04:27148312..27148336 (25 bp)
AAGCAGAGCTCGTTCGCTGTTGCAA
NONE
OsAffx.31659.1.S1_s_at--236--5053Chr04:27148314..27148338 (25 bp)
GCAGAGCTCGTTCGCTGTTGCAACA
NONE
OsAffx.31659.1.S1_s_at--420--1593Chr04:27148318..27148342 (25 bp)
AGCTCGTTCGCTGTTGCAACACCGA
NONE
OsAffx.31659.1.S1_s_at--1160--6693Chr04:27148323..27148346 (24 bp)
GTTCGCTGTTGCAACACCGACGACG
NONE
OsAffx.31659.1.S1_s_at--912--8792Chr12:4896803..4896827 (25 bp)
TGTTGCAACACCGACGACGGCAAGG
LOC_Os12g09340
OsAffx.31659.1.S1_s_at--579--3272Chr12:4896798..4896822 (25 bp)
CAACACCGACGACGGCAAGGGTGAC
LOC_Os12g09340
OsAffx.31659.1.S1_s_at--947--4253Chr04:27148381..27148405 (25 bp)
CCGGAATCCGAGAGGGCAGCGTGGT
NONE
OsAffx.31659.1.S1_s_at--169--8453Chr12:4896718..4896742 (25 bp)
TGGCCGGCGCCGATCGTTTCACTGA
LOC_Os12g09340
Target Sequence 
ATGCTCGTACGCTCCGTGTGCATGCCCTTCGCATGCGGCTGCGAGCGCAAGCAGAGCTCGTTCGCTGTTGCAACACCGAC
GACGGCAAGGGTGACAACGGAGAGAAGGCAGGGGATGCCGGAATCCGAGAGGGCAGCGTGGTCGACTCACTGGCCGGCGC
CGATCGTTTCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31659.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis