Browse Element(s) Details


OsAffx.32149.5.S1_at

Description tigr:9636.m03860
TID=OsAffx.32149.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3833011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32149.5.S1_at--22--8411Chr08:24146733..24146757 (25 bp)
GGCGCGTGTGCGTGGCGACTGTCGA
LOC_Os08g38330
OsAffx.32149.5.S1_at--308--8351Chr08:24146704..24146728 (25 bp)
GGCGACAGGGAAACCAACGCCGTGT
LOC_Os08g38330
OsAffx.32149.5.S1_at--114--2111Chr08:24146700..24146724 (25 bp)
ACAGGGAAACCAACGCCGTGTGGCT
LOC_Os08g38330
OsAffx.32149.5.S1_at--676--3831Chr08:24146563..24146587 (25 bp)
CTGCAGGCCCACGACGAGAGCTCCA
LOC_Os08g38330
OsAffx.32149.5.S1_at--995--6131Chr08:24146512..24146536 (25 bp)
GAGGTGTTCCACCTGAACTCGCCGC
LOC_Os08g38330
OsAffx.32149.5.S1_at--758--4591Chr08:24146466..24146490 (25 bp)
GCGACTACCGAATCTGCTGGGGCTA
LOC_Os08g38330
OsAffx.32149.5.S1_at--582--8991Chr08:24146346..24146370 (25 bp)
TGAAGCCCGTGAGCGAGGCGCACGA
LOC_Os08g38330
OsAffx.32149.5.S1_at--55--4131Chr08:24146328..24146352 (25 bp)
CGCACGAGCGGAAAGGTCAGAAAGC
LOC_Os08g38330
OsAffx.32149.5.S1_at--836--2311Chr08:24146317..24146341 (25 bp)
AAAGGTCAGAAAGCGACCCTGCACA
LOC_Os08g38330
OsAffx.32149.5.S1_at--853--1411Chr08:24146310..24146334 (25 bp)
AGAAAGCGACCCTGCACACCGTCTG
LOC_Os08g38330
OsAffx.32149.5.S1_at--303--4691Chr08:24146258..24146282 (25 bp)
GCGGAAGCTCCCCAGCGAGTTGCAC
LOC_Os08g38330
Target Sequence 
GGCGCGTGTGCGTGGCGACTGTCGACGACGGCGACAGGGAAACCAACGCCGTGTGGCTGCTCATCACGACCGAACGCCGG
TGGGAGCGGCGGTGCGCGTTCCGCAACGACTGGTACTGGCCGGCGACGGTCGCCGGCGTCTGGGACTGCGGCGGCGCGCT
GCTCATCGCCCTGCAGGCCCACGACGAGAGCTCCATCTTCCTCTACGACGACGCGACGGGGGAGGTGTTCCACCTGAACT
CGCCGCCTCACGCGTCGCCGGAGAAGAGCGACTACCGAATCTGCTGGGGCTACAAGCCGACGCTCGTGTCGCCGGCGAGC
ATCGCGGGCGAGGCGAGCCAGGACGAGCGGCGGCGCCGCGACGTGGCGGCGGATGTGCTCGCCGCCGTGAAGCCCGTGAG
CGAGGCGCACGAGCGGAAAGGTCAGAAAGCGACCCTGCACACCGTCTGCTTCATGGAGTTCTTGGTCGGCGTCATGCGGA
AGCTCCCCAGCGAGTTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32149.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis