Browse Element(s) Details


OsAffx.32230.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32230.1
CNT=1
FEA=DNA_31
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; atpE; ATPase epsilon subunit (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g270506/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27000Os.41695.15.S1_s_at11/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.2.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.3.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.5.S1_x_at2/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.4.S1_x_at1/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32230.1.A1_at--790--2999Chr12:5610765..5610789 (25 bp)
AATGATTTCTTTCACTTCACAATCC
NONE
OsAffx.32230.1.A1_at--499--8839Chr12:5610767..5610791 (25 bp)
TGATTTCTTTCACTTCACAATCCCA
NONE
OsAffx.32230.1.A1_at--466--65310Chr12:5610768..5610792 (25 bp)
GATTTCTTTCACTTCACAATCCCAA
NONE
OsAffx.32230.1.A1_at--789--199Chr12:5610769..5610793 (25 bp)
ATTTCTTTCACTTCACAATCCCAAA
NONE
OsAffx.32230.1.A1_at--1097--10319Chr12:5610770..5610794 (25 bp)
TTTCTTTCACTTCACAATCCCAAAT
NONE
OsAffx.32230.1.A1_at--309--10579Chr12:5610771..5610795 (25 bp)
TTCTTTCACTTCACAATCCCAAATA
NONE
OsAffx.32230.1.A1_at--194--9558Chr12:5610772..5610796 (25 bp)
TCTTTCACTTCACAATCCCAAATAA
NONE
OsAffx.32230.1.A1_at--517--10338Chr12:5610774..5610798 (25 bp)
TTTCACTTCACAATCCCAAATAATT
NONE
OsAffx.32230.1.A1_at--862--9658Chr12:5610776..5610800 (25 bp)
TCACTTCACAATCCCAAATAATTCG
NONE
OsAffx.32230.1.A1_at--318--2058Chr12:5610778..5610802 (25 bp)
ACTTCACAATCCCAAATAATTCGCT
NONE
OsAffx.32230.1.A1_at--975--3658Chr12:5610779..5610803 (25 bp)
CTTCACAATCCCAAATAATTCGCTT
NONE
Target Sequence 
AATGATTTCTTTCACTTCACAATCCCAAATAATTCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32230.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis