Browse Element(s) Details


OsAffx.32238.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=ndhG
TID=OsAffx.32238.1
CNT=1
FEA=DNA_89
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH dehydrogenase ND6 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=NADH dehydrogenase ND6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g496145/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49550OsAffx.11532.1.S1_at10/111+28825470..28827934hypothetical protein
LOC_Os01g49560OsAffx.21488.1.S1_at11/111+28829211..28830102hypothetical protein
LOC_Os01g49570NANA1+28836103..28836420hypothetical protein
LOC_Os01g49580Os.11986.3.S1_x_at6/111+28839944..28841121expressed protein
LOC_Os01g49580Os.11986.3.S1_at4/111+28839944..28841121expressed protein
LOC_Os01g49580Os.27097.1.A1_at2/111+28839944..28841121expressed protein
LOC_Os01g49580Os.27097.1.A1_x_at1/111+28839944..28841121expressed protein
LOC_Os01g49590OsAffx.11534.2.S1_at11/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590Os.11986.2.S1_x_at11/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590OsAffx.11534.1.S1_x_at7/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590Os.11986.1.S1_at2/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590OsAffx.24523.1.S1_at1/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49600OsAffx.21488.1.S1_at11/111+28849330..28850221hypothetical protein
LOC_Os01g49614Os.11986.1.S1_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.11534.1.S1_x_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.3.S1_x_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.3.S1_at11/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.41662.1.S1_x_at9/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32334.1.S1_s_at7/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32334.1.S1_x_at6/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614OsAffx.32238.1.A1_at5/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.11986.2.S1_x_at4/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.41662.1.S1_at3/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.27097.1.A1_at2/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.27097.1.A1_x_at1/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49614Os.19294.1.S1_at1/111+28850853..28861236Protein kinase domain containing protein, expressed
LOC_Os01g49630Os.28525.1.S1_at11/111+28861668..28863344expressed protein
LOC_Os01g49640Os.18388.1.S1_at11/111+28864720..28865464Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os01g49650Os.18388.3.S1_at11/111+28865645..28866205Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g49660OsAffx.23728.1.S1_at11/111+28866841..28868101Reticulon family protein
LOC_Os01g49670Os.7027.1.S1_a_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49670Os.7027.1.S1_s_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32238.1.A1_at--863--2257Chr12:5625214..5625238 (25 bp)
AAATCGGTTGCTAAATGAATCCCAA
NONE
OsAffx.32238.1.A1_at--758--597Chr12:5625228..5625252 (25 bp)
ATGAATCCCAATTTGTTGAACGTTA
NONE
OsAffx.32238.1.A1_at--396--10757Chr12:5625243..5625267 (25 bp)
TTGAACGTTATTTATGAGACCCTGT
NONE
OsAffx.32238.1.A1_at--267--5997Chr12:5625258..5625282 (25 bp)
GAGACCCTGTTCTACTATTTGGTTT
NONE
OsAffx.32238.1.A1_at--282--6936Chr12:5625289..5625313 (25 bp)
GTAGTCCAAAGAATTCCATACCATG
NONE
OsAffx.32238.1.A1_at--679--10677Chr12:5625302..5625326 (25 bp)
TTCCATACCATGACGTATCTGGGAT
NONE
OsAffx.32238.1.A1_at--10--7357Chr12:5625365..5625389 (25 bp)
GTGAAGTGAACCCATCTCCAATAGT
NONE
OsAffx.32238.1.A1_at--404--5456Chr12:5625372..5625396 (25 bp)
GAACCCATCTCCAATAGTCCAAAAA
NONE
OsAffx.32238.1.A1_at--916--10437Chr02:14245134..14245158 (25 bp)
TTAGACCATTCTGAGCCATTTACGA
NONE
OsAffx.32238.1.A1_at--532--1696Chr02:14245147..14245171 (25 bp)
AGCCATTTACGAACATTACGGCAAA
NONE
OsAffx.32238.1.A1_at--906--6458Chr12:5625447..5625471 (25 bp)
GATCAAGACATTTATAGCTCCCACA
NONE
Target Sequence 
AAATCGGTTGCTAAATGAATCCCAATTTGTTGAACGTTATTTATGAGACCCTGTTCTACTATTTGGTTTGATCTTGTAGT
CCAAAGAATTCCATACCATGACGTATCTGGGATAGTAGTCATTAGTGAAAAAGGAATAGTTATACAAACGAGTGAAGTGA
ACCCATCTCCAATAGTCCAAAAATTCTTATCTTTAGACCATTCTGAGCCATTTACGAACATTACGGCAAATATGATCAAG
ACATTTATAGCTCCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32238.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis