Browse Element(s) Details


OsAffx.32332.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rps11
TID=OsAffx.32332.1
CNT=1
FEA=DNA_60
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S11 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein S11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2271011/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os04g1679011/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g2133011/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os08g1525011/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os01g579449/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os06g397007/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os09g079106/11DNA-directed RNA polymerase alpha chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22660OsAffx.25156.2.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.1.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.5.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.4.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22670Os.4951.1.S1_at10/115+12788250..12794695Transcription factor IIA, alpha/beta subunit family protein, expressed
LOC_Os05g22680OsAffx.12157.1.S1_at1/115+12800481..12801328retrotransposon protein, putative, unclassified
LOC_Os05g22690OsAffx.2719.1.S1_at2/115+12803008..12803511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22700OsAffx.11392.2.S1_x_at3/115+12803770..12805178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22710OsAffx.32332.1.S1_x_at11/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32333.1.S1_x_at11/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32331.1.S1_x_at7/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32334.1.S1_x_at5/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22730Os.25561.1.S1_at10/115+12818200..12819117one helix protein, putative, expressed
LOC_Os05g22740OsAffx.15207.1.S1_at11/115+12821691..12822482hypothetical protein
LOC_Os05g22750OsAffx.18275.1.S1_x_at2/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22750OsAffx.26607.2.S1_at1/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22760NANA5+12833017..12835427hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32332.1.S1_x_at--607--1895Chr08:9261249..9261273 (25 bp)
ACGTATTGGTTTGCGTAGGAATGCG
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--135--5277Chr08:9261267..9261291 (25 bp)
GAATGCGCGTTTTAGTTTACGGAAG
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--761--2318Chr08:9261310..9261334 (25 bp)
AAAGGAGTTATTCATGTTCAAGCTA
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--686--9796Chr08:9261353..9261377 (25 bp)
TAACTGTTACAGATCCGCAAGGTCG
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--930--3416Chr08:9261362..9261386 (25 bp)
CAGATCCGCAAGGTCGGGTGGTTTT
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--172--3818Chr08:9261393..9261417 (25 bp)
CTCCGCGGGTACTTGTGGATTCAAA
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--501--2716Chr08:9261428..9261452 (25 bp)
AAGCATCACCCTATGCTGGTCAAAG
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--940--5496Chr08:9261452..9261476 (25 bp)
GAACAGCTGTAGATGCTATTCGTAC
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--977--4876Chr08:9261466..9261490 (25 bp)
GCTATTCGTACAGTGGGTTTGCAAC
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--376--1358Chr08:9261526..9261550 (25 bp)
AGAGATGCCGCATTACGAGCCATTG
LOC_Os08g15250
OsAffx.32332.1.S1_x_at--460--4639Chr08:9261583..9261604 (22 bp)
GCGATGTAACACCTATGCCGCATAA
LOC_Os08g15250
Target Sequence 
ACGTATTGGTTTGCGTAGGAATGCGCGTTTTAGTTTACGGAAGAGTGCACGTAGAATAACAAAAGGAGTTATTCATGTTC
AAGCTAGTTTCAACAATACTATTATAACTGTTACAGATCCGCAAGGTCGGGTGGTTTTCTGGTCCTCCGCGGGTACTTGT
GGATTCAAAAGCTCAAGAAAAGCATCACCCTATGCTGGTCAAAGAACAGCTGTAGATGCTATTCGTACAGTGGGTTTGCA
ACGAGCAGAAGTTATGGTAAAGGGTGCTGGTAGTGGAAGAGATGCCGCATTACGAGCCATTGCTAAAAGTGGTGTACGAT
TAAGTTGTATACGCGATGTAACACCTATGCCGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32332.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis