Browse Element(s) Details


OsAffx.3277.1.S1_s_at

Description tigr:9631.m01934
TID=OsAffx.3277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1955011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19510Os.8476.1.S1_at11/113+10945631..10948614ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os03g19520Os.5359.1.S1_at11/113+10949596..10958074cyclin, putative, expressed
LOC_Os03g19530Os.54397.1.S1_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.26950.1.A1_s_at11/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19530Os.28943.1.S1_x_at1/113+10963043..10967232DEAD/DEAH box helicase family protein, expressed
LOC_Os03g19540Os.53023.1.S1_at10/113+10967883..10969026expressed protein
LOC_Os03g19550OsAffx.3277.1.S1_s_at11/113+10970060..10971339expressed protein
LOC_Os03g19560Os.19474.1.S1_a_at11/113+10971683..10976387TPR Domain containing protein, expressed
LOC_Os03g19570OsAffx.12938.1.S1_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19570Os.7345.1.S1_x_at11/113+10977833..10985302Fip1 motif family protein, expressed
LOC_Os03g19580Os.6884.1.S1_at11/113+10986381..10990714expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3277.1.S1_s_at--536--8091Chr03:10970942..10970966 (25 bp)
GGAGCGCCTGCGTTCGCGCAGCATC
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--894--8091Chr03:10971200..10971224 (25 bp)
GGCAGGCCGGCGTATTAGGGAGGGA
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--558--7651Chr03:10971221..10971245 (25 bp)
GGGAGTGCATTGCTAAGCTTGTCCT
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--292--1131Chr03:10971224..10971248 (25 bp)
AGTGCATTGCTAAGCTTGTCCTCTT
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--1057--3591Chr03:10971228..10971252 (25 bp)
CATTGCTAAGCTTGTCCTCTTGCAA
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--340--7251Chr03:10971241..10971265 (25 bp)
GTCCTCTTGCAATCTTTCGAGCCAA
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--1119--9571Chr03:10971245..10971269 (25 bp)
TCTTGCAATCTTTCGAGCCAACACA
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--571--751Chr03:10971271..10971295 (25 bp)
ATGTATGTACTGTTGATCCTAATTG
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--806--8751Chr03:10971276..10971300 (25 bp)
TGTACTGTTGATCCTAATTGTTGTT
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--731--3872Chr03:10971280..10971304 (25 bp)
CTGTTGATCCTAATTGTTGTTTGTA
LOC_Os03g19550
OsAffx.3277.1.S1_s_at--666--6371Chr03:10971285..10971309 (25 bp)
GATCCTAATTGTTGTTTGTAATCAC
LOC_Os03g19550
Target Sequence 
GGAGCGCCTGCGTTCGCGCAGCATCCCCCGGCGGGACAGCGACCTTTCTGGAGCCCACCGACGGTGCCGCCGTGTTACCC
GGCACCATTCTGGGGCGCGCCGTTCTGGGGTGCTCAACCTCCGCCGCCGCGGCCGTCGCCGCTGCCGCACTGGGGCCACA
TCAGATCGCCGCCAGCTCCAGCGCTGCATCAGCCACCTCCTCCCACCTTGCAGCTGCAGCAGCAGCAATCGCCGCCGCCG
CCGCCGGGAGTTTTCTGGGGCAGGCCGGCGTATTAGGGAGGGAGTGCATTGCTAAGCTTGTCCTCTTGCAATCTTTCGAG
CCAACACAGATGTATGTACTGTTGATCCTAATTGTTGTTTGTAATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3277.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis