Browse Element(s) Details


OsAffx.3595.1.S1_at

Description tigr:9631.m05201
TID=OsAffx.3595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5308011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed
LOC_Os03g53070OsAffx.25696.1.S1_s_at11/113+30387085..30388229PRA1 family protein, expressed
LOC_Os03g53080OsAffx.3595.1.S1_at11/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.5156.1.S1_s_at10/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.3924.1.S1_at1/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53090OsAffx.12125.1.S1_x_at11/113+30399484..30400591Leucine Rich Repeat family protein
LOC_Os03g53100Os.47324.1.S1_s_at11/113+30401928..30403549Response regulator receiver domain containing protein, expressed
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g53119NANA3+30414593..30415220NA
LOC_Os03g53130Os.35344.3.S1_x_at11/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130Os.35344.18.S1_x_at10/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130OsAffx.22940.5.S1_x_at3/113+30419042..30424995transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3595.1.S1_at--569--2431Chr03:30392084..30392108 (25 bp)
AAAACCACCTCAGACTATGAGCTGA
LOC_Os03g53080
OsAffx.3595.1.S1_at--849--10511Chr03:30392040..30392064 (25 bp)
TTCACAGCAGGGACAGATTGGTTCT
LOC_Os03g53080
OsAffx.3595.1.S1_at--974--1431Chr03:30392012..30392036 (25 bp)
AGAACTGGTGCTTTGCATGATGGAA
LOC_Os03g53080
OsAffx.3595.1.S1_at--645--951Chr03:30391977..30392001 (25 bp)
AGTATGGTTTTTGCTTGTCCCTTCA
LOC_Os03g53080
OsAffx.3595.1.S1_at--8--8491Chr03:30391603..30391986 (25 bp)
TGTCCCTTCACCTGACCAGAAACAA
LOC_Os03g53080
OsAffx.3595.1.S1_at--828--5531Chr03:30391856..30391880 (25 bp)
GAAACAAGATCCCAGGCTGCCTCAG
LOC_Os03g53080
OsAffx.3595.1.S1_at--522--1551Chr03:30391833..30391857 (25 bp)
AGCTACCAACATATTACGTGAGAAT
LOC_Os03g53080
OsAffx.3595.1.S1_at--330--2851Chr03:30391427..30391451 (25 bp)
AAGTCTGCAGACTTCCTTGATCCAG
LOC_Os03g53080
OsAffx.3595.1.S1_at--1088--6291Chr03:30390991..30391011 (21 bp)
GATGAGGTGGAGATCACATGCCATG
LOC_Os03g53080
OsAffx.3595.1.S1_at--1031--2071Chr03:30390943..30390967 (25 bp)
ACATTGCAAGGCCTGCTCGAGCTGT
LOC_Os03g53080
OsAffx.3595.1.S1_at--163--4411Chr03:30390782..30390806 (25 bp)
GCCACAATCCATCTGCTGCAAAATC
LOC_Os03g53080
Target Sequence 
AAAACCACCTCAGACTATGAGCTGAGGAAAGGACAACATGCTGATTCACAGCAGGGACAGATTGGTTCTACAAGAACTGG
TGCTTTGCATGATGGAATAACTAGACCAGTATGGTTTTTGCTTGTCCCTTCACCTGACCAGAAACAAGATCCCAGGCTGC
CTCAGCTACCAACATATTACGTGAGAATTAAAGATGGAAGTCTGCAGACTTCCTTGATCCAGAGGTACATCATGAATAAG
CTTGACCTAGCAAGTGAAGATGAGGTGGAGATCACATGCCATGGCGAGGCAATCTCCCCCTCGACCACATTGCAAGGCCT
GCTCGAGCTGTGGCTGAAGAGCTCGCCGGTGGAGCAGGTCCAGGCGTCGCTGGGCGCTCAAGCCAAGGAGTTCGTCATGG
AGCTCGGCTACCGCCGGCCACAGCGGCCTCCTTCCTCTTAGCTAGCTGCAACCTCTACTCCTCCAGTGCCACAATCCATC
TGCTGCAAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis