Browse Element(s) Details


OsAffx.3771.1.S1_at

Description tigr:9632.m01070
TID=OsAffx.3771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1195611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11910OsAffx.28472.1.S1_x_at11/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.5.S1_x_at4/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.1.S1_x_at2/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.3.S1_x_at2/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.19815.1.S1_at1/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.2.S1_x_at1/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11920NANA4+6520383..6523255retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11930Os.10827.1.S1_x_at10/114+6527270..6530555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11930Os.46055.2.S1_x_at5/114+6527270..6530555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11940NANA4+6531151..6531423hypothetical protein
LOC_Os04g11950OsAffx.25936.1.S1_s_at10/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.7.S1_s_at10/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.2.S1_x_at5/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.5.S1_x_at2/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11956OsAffx.3771.1.S1_at11/114+6538167..6538885expressed protein
LOC_Os04g11962NANA4+6540432..6540785hypothetical protein
LOC_Os04g11970OsAffx.13783.1.S1_at11/114+6544793..6546274O-methyltransferase family protein
LOC_Os04g11980Os.18013.1.S1_x_at11/114+6547895..6548662expressed protein
LOC_Os04g11990OsAffx.25990.1.S1_at11/114+6555938..6559384hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3771.1.S1_at--416--571Chr04:6538742..6538766 (25 bp)
ATCCTCAAACCCTACTCGAGGCGAG
LOC_Os04g11956
OsAffx.3771.1.S1_at--292--8371Chr04:6538673..6538697 (25 bp)
GGCGTGCATCGAGAGCTCCAGATCC
LOC_Os04g11956
OsAffx.3771.1.S1_at--1044--3531Chr04:6538667..6538691 (25 bp)
CATCGAGAGCTCCAGATCCGGTGGT
LOC_Os04g11956
OsAffx.3771.1.S1_at--779--7491Chr04:6538647..6538671 (25 bp)
GTGGTGGCTGTCTTCGATAGCATTA
LOC_Os04g11956
OsAffx.3771.1.S1_at--711--6491Chr04:6538632..6538656 (25 bp)
GATAGCATTAGATCCGGTGGCAGCG
LOC_Os04g11956
OsAffx.3771.1.S1_at--359--8051Chr04:6538593..6538617 (25 bp)
GGAGAACAAGACTCGGCTCCTTCCT
LOC_Os04g11956
OsAffx.3771.1.S1_at--914--2871Chr04:6538538..6538562 (25 bp)
AAGGGCAGCAATGACCTCGGTGGCT
LOC_Os04g11956
OsAffx.3771.1.S1_at--679--491Chr04:6538481..6538505 (25 bp)
ATCGACTTCTCCACGGCGGTGGGAG
LOC_Os04g11956
OsAffx.3771.1.S1_at--446--8371Chr04:6538404..6538428 (25 bp)
GGCGATCCTCGAGACAGTCAAGGAG
LOC_Os04g11956
OsAffx.3771.1.S1_at--1144--6291Chr04:6538238..6538262 (25 bp)
GATGATGGCAACCACGGCAGCCATG
LOC_Os04g11956
OsAffx.3771.1.S1_at--1038--3371Chr04:6538221..6538245 (25 bp)
CAGCCATGGTGACGTCTGCATCGAG
LOC_Os04g11956
Target Sequence 
ATCCTCAAACCCTACTCGAGGCGAGCCAGCGATAAAGAGGAGGATAACTGTGGTGGCAGATCTAGTGGCGGCGTGCATCG
AGAGCTCCAGATCCGGTGGTGGCTGTCTTCGATAGCATTAGATCCGGTGGCAGCGGTGGTTGGTGGTGGGGAGAACAAGA
CTCGGCTCCTTCCTCCTCTCAACGGCTCGGCTGAGGACGGCGGGAAGGGCAGCAATGACCTCGGTGGCTTCCACCTCTTC
GGCGACGCCGCCGTCGATGGCATCGACTTCTCCACGGCGGTGGGAGGTACCGTGGGGGTGGATCCAGCGGTGGGCGATGC
TCGGCTGGCTGGGGCGTGGGCGATCCTCGAGACAGTCAAGGAGGTGGATCCGGCGGTGGCTGGCACAACGATGACGACGG
ACGGGCTCCTCCAACTCCCTCCCCTCTCCCAGATCCGACAGGCGGCGGGTCGGGGCCACCTGGTGGTTGCGGCTCGGCTC
GAGCATGGGCTTCGGTGGGGCAGCGATGATGGCAACCACGGCAGCCATGGTGACGTCTGCATCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis