Browse Element(s) Details


OsAffx.4146.1.S1_at

Description tigr:9632.m04960
TID=OsAffx.4146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5136011/11oxidoreductase, 2OG-Fe oxygenase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4146.1.S1_at--830--2731Chr04:30195997..30196021 (25 bp)
AAGACGAGTTCAGCATTACGGTTTC
LOC_Os04g51360
OsAffx.4146.1.S1_at--1004--1271Chr04:30195692..30195716 (25 bp)
AGATCATGTCATTTCCTGGTGCAAA
LOC_Os04g51360
OsAffx.4146.1.S1_at--723--7571Chr04:30195454..30195478 (25 bp)
GGGTAGGTTTGTCACCACATATAGA
LOC_Os04g51360
OsAffx.4146.1.S1_at--755--291Chr04:30195434..30195458 (25 bp)
ATAGACACACATTCAGCATTCGAAG
LOC_Os04g51360
OsAffx.4146.1.S1_at--358--10451Chr04:30195400..30195424 (25 bp)
TTAGTCTTTCTTTGGCTGGACCATG
LOC_Os04g51360
OsAffx.4146.1.S1_at--939--2931Chr04:30195349..30195373 (25 bp)
AAGGCAGTTGGCGTGCTCCAAGTAT
LOC_Os04g51360
OsAffx.4146.1.S1_at--133--5531Chr04:30195277..30195301 (25 bp)
GAAAAGCTGTTTTTCTACCTCCTCG
LOC_Os04g51360
OsAffx.4146.1.S1_at--821--9971Chr04:30195262..30195286 (25 bp)
TACCTCCTCGATCGATGTTACTGAT
LOC_Os04g51360
OsAffx.4146.1.S1_at--351--891Chr04:30195228..30195252 (25 bp)
AGGCCGATATGCTTGGCATCACTAT
LOC_Os04g51360
OsAffx.4146.1.S1_at--1114--8271Chr04:30195214..30195238 (25 bp)
GGCATCACTATATACCACACCATAA
LOC_Os04g51360
OsAffx.4146.1.S1_at--422--991Chr04:30194737..30194761 (25 bp)
AGGATGGGTCTTTGCGACTGCGAAT
LOC_Os04g51360
Target Sequence 
AAGACGAGTTCAGCATTACGGTTTCGAGTTTCTGTATGAAACAAGGAATGTTGACTCAAAGCAGTTCTTAGGTGAATTGC
CACCTTTTGTTTCAAAGATTATTGATAAGATCATGTCATTTCCTGGTGCAAATAAATGTACTAGCAAGCTGGTTGATCAA
TTGACAGTGAATGAATATCCCTGTGGGGTAGGTTTGTCACCACATATAGACACACATTCAGCATTCGAAGAAATGATTTT
TAGTCTTTCTTTGGCTGGACCATGCATTATGGAGTTCAGAAAATACCCTAAAGGCAGTTGGCGTGCTCCAAGTATGGTCA
GTGGAACTGATAAAGATAGCATTGAAGAGCCACAGTGCATTAGAAAAGCTGTTTTTCTACCTCCTCGATCGATGTTACTG
ATGTCTGGAGAAGGCCGATATGCTTGGCATCACTATATACCACACCATAAAATTGATGATGTGGGTGGTCAAGTCATCAA
GAGAAATACACGACGGGTTTCCTTTACTTTTCGAAAGGTGAGGATGGGTCTTTGCGACTGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis