Browse Element(s) Details


OsAffx.4410.1.S1_at

Description tigr:9633.m02121
TID=OsAffx.4410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2385011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23830OsAffx.14829.1.S1_x_at2/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23830OsAffx.6363.1.S1_at1/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23840Os.46317.1.A1_at11/115+13624655..13628340expressed protein
LOC_Os05g23840OsAffx.14796.1.S1_at10/115+13624655..13628340expressed protein
LOC_Os05g23850OsAffx.4410.1.S1_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.12799.1.S1_s_at11/115+13630921..13633741expressed protein
LOC_Os05g23850Os.22702.1.S1_x_at3/115+13630921..13633741expressed protein
LOC_Os05g23850Os.27530.1.S1_at1/115+13630921..13633741expressed protein
LOC_Os05g23860Os.1322.1.S1_at11/115+13637844..13642862Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4410.1.S1_at--982--9891Chr05:13631933..13631957 (25 bp)
TACTCTGTTTACCAAAATAACGACA
LOC_Os05g23850
OsAffx.4410.1.S1_at--474--351Chr05:13631917..13631941 (25 bp)
ATAACGACAAATTTTCGTCTTCTGA
LOC_Os05g23850
OsAffx.4410.1.S1_at--541--2191Chr05:13631911..13631935 (25 bp)
ACAAATTTTCGTCTTCTGATGCCAC
LOC_Os05g23850
OsAffx.4410.1.S1_at--583--171Chr05:13631907..13631931 (25 bp)
ATTTTCGTCTTCTGATGCCACTGGT
LOC_Os05g23850
OsAffx.4410.1.S1_at--591--10391Chr05:13631906..13631930 (25 bp)
TTTTCGTCTTCTGATGCCACTGGTG
LOC_Os05g23850
OsAffx.4410.1.S1_at--908--7771Chr05:13631885..13631909 (25 bp)
GGTGCAGCGCGCTGTGTGTTCCACT
LOC_Os05g23850
OsAffx.4410.1.S1_at--1056--1651Chr05:13631880..13631904 (25 bp)
AGCGCGCTGTGTGTTCCACTCTAGT
LOC_Os05g23850
OsAffx.4410.1.S1_at--339--4731Chr05:13631875..13631899 (25 bp)
GCTGTGTGTTCCACTCTAGTGTTAT
LOC_Os05g23850
OsAffx.4410.1.S1_at--661--7471Chr05:13631872..13631896 (25 bp)
GTGTGTTCCACTCTAGTGTTATAGT
LOC_Os05g23850
OsAffx.4410.1.S1_at--474--10691Chr05:13631426..13631891 (25 bp)
TTCCACTCTAGTGTTATAGTTGCTA
LOC_Os05g23850
OsAffx.4410.1.S1_at--388--3711Chr05:13631419..13631884 (25 bp)
CTAGTGTTATAGTTGCTAGGCTCCT
LOC_Os05g23850
Target Sequence 
TACTCTGTTTACCAAAATAACGACAAATTTTCGTCTTCTGATGCCACTGGTGCAGCGCGCTGTGTGTTCCACTCTAGTGT
TATAGTTGCTAGGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis