Browse Element(s) Details


OsAffx.4731.1.S1_s_at

Description tigr:9634.m00466
TID=OsAffx.4731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0543011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05390Os.27510.1.A1_at11/116+2432466..2436337expressed protein
LOC_Os06g05400Os.53135.1.S1_at10/116+2436600..2438808expressed protein
LOC_Os06g05410Os.10862.1.S1_at11/116+2440704..2441550expressed protein
LOC_Os06g05420Os.50399.1.S1_at11/116+2448206..2448823expressed protein
LOC_Os06g05430Os.50383.1.S1_at11/116+2452482..2453047expressed protein
LOC_Os06g05430OsAffx.4731.1.S1_s_at11/116+2452482..2453047expressed protein
LOC_Os06g05440Os.10736.1.S1_at11/116+2456359..2457127expressed protein
LOC_Os06g05450Os.51845.1.S1_x_at11/116+2460056..2461959expressed protein
LOC_Os06g05450Os.23578.1.S1_at11/116+2460056..2461959expressed protein
LOC_Os06g05460NANA6+2463761..2468028retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g05470Os.57191.1.S1_at11/116+2471739..2472387expressed protein
LOC_Os06g05480Os.5525.1.S1_at11/116+2476594..2477395expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4731.1.S1_s_at--1052--4371Chr06:2452876..2452900 (25 bp)
CCAAGGTAGGATTCGGTGCTCTCAC
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--153--10091Chr06:2452870..2452894 (25 bp)
TAGGATTCGGTGCTCTCACTTGCAA
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--581--9431Chr06:2452864..2452888 (25 bp)
TCGGTGCTCTCACTTGCAATTCCAT
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--391--3631Chr06:2452852..2452876 (25 bp)
CTTGCAATTCCATCTTCGCCATCTA
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--711--431Chr06:2452832..2452856 (25 bp)
ATCTACAGGTCGCAGGGTGACCTCG
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--180--2951Chr06:2452706..2452730 (25 bp)
AAGGCGGCTGTGTGGTCGCTCACCA
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--496--9091Chr06:2452678..2452702 (25 bp)
TGCTCACCGCAATGTTCGCGTCAAG
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--354--9651Chr06:2452675..2452699 (25 bp)
TCACCGCAATGTTCGCGTCAAGGGT
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--478--2991Chr06:2452668..2452692 (25 bp)
AATGTTCGCGTCAAGGGTGGCGCCT
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--125--9291Chr06:2452663..2452687 (25 bp)
TCGCGTCAAGGGTGGCGCCTCTCAT
LOC_Os06g05430
OsAffx.4731.1.S1_s_at--400--2891Chr06:2452656..2452680 (25 bp)
AAGGGTGGCGCCTCTCATGCCGCCG
LOC_Os06g05430
Target Sequence 
CCAAGGTAGGATTCGGTGCTCTCACTTGCAATTCCATCTTCGCCATCTACAGGTCGCAGGGTGACCTCGCCTCGGTGGCC
TTCGTCGTCGCCGCGTACGCCGCGCTGCTGCTGCTCTTCTACTTCCTCGGCAAGTTCGAGCGCGCGCGCCCGGAGGAGAG
GGGCAAGGTGAAGGCGGCTGTGTGGTCGCTCACCACGCTGCTCACCGCAATGTTCGCGTCAAGGGTGGCGCCTCTCATGC
CGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4731.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis