Browse Element(s) Details


OsAffx.4739.1.S1_at

Description tigr:9634.m00549
TID=OsAffx.4739.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0622011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06160Os.10766.1.A1_at11/116+2854454..2858561calmodulin-binding family protein, putative, expressed
LOC_Os06g06170OsAffx.27469.1.S1_at11/116+2858872..2860407expressed protein
LOC_Os06g06180OsAffx.15284.1.S1_at11/116+2860701..2862180Transferase family protein, expressed
LOC_Os06g06190Os.17072.1.S1_at11/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06190Os.9035.1.S1_at1/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06200NANA6+2869178..2871701retrotransposon protein, putative, LINE subclass
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06250Os.10772.1.S1_x_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250Os.10772.1.S1_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_x_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270OsAffx.15287.1.S1_at11/116+2899816..2900142hypothetical protein
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4739.1.S1_at--728--5691Chr06:2876471..2876495 (25 bp)
GACTTCATGGCACCGGCAACAAGTT
LOC_Os06g06220
OsAffx.4739.1.S1_at--850--1671Chr06:2876488..2876512 (25 bp)
AACAAGTTCTACTCAGGTTGTGGAC
LOC_Os06g06220
OsAffx.4739.1.S1_at--346--1231Chr06:2876492..2876516 (25 bp)
AGTTCTACTCAGGTTGTGGACACGA
LOC_Os06g06220
OsAffx.4739.1.S1_at--151--3731Chr06:2876496..2876520 (25 bp)
CTACTCAGGTTGTGGACACGATGTT
LOC_Os06g06220
OsAffx.4739.1.S1_at--945--7911Chr06:2876503..2876527 (25 bp)
GGTTGTGGACACGATGTTAACATCT
LOC_Os06g06220
OsAffx.4739.1.S1_at--878--6271Chr06:2876515..2876539 (25 bp)
GATGTTAACATCTCTGACCACTGCA
LOC_Os06g06220
OsAffx.4739.1.S1_at--342--10491Chr06:2876519..2876543 (25 bp)
TTAACATCTCTGACCACTGCACCTT
LOC_Os06g06220
OsAffx.4739.1.S1_at--122--4151Chr06:2876559..2876583 (25 bp)
CGCTGGCAGCCTTCGCGATGGAGCA
LOC_Os06g06220
OsAffx.4739.1.S1_at--107--3391Chr06:2876565..2876589 (25 bp)
CAGCCTTCGCGATGGAGCAAGAGGT
LOC_Os06g06220
OsAffx.4739.1.S1_at--752--1311Chr06:2876604..2876628 (25 bp)
AGATGGTGCTGAGTATAATGATGAC
LOC_Os06g06220
OsAffx.4739.1.S1_at--185--9771Chr06:2876619..2876643 (25 bp)
TAATGATGACAAGGCCGGCTGTGGC
LOC_Os06g06220
Target Sequence 
GACTTCATGGCACCGGCAACAAGTTCTACTCAGGTTGTGGACACGATGTTAACATCTCTGACCACTGCACCTTCAACTCA
GCCGTTCCCGCTGGCAGCCTTCGCGATGGAGCAAGAGGTGGCAGTGCAGCAGAAGATGGTGCTGAGTATAATGATGACAA
GGCCGGCTGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis